View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21432_low_2 (Length: 421)

Name: NF21432_low_2
Description: NF21432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21432_low_2
NF21432_low_2
[»] chr4 (11 HSPs)
chr4 (16-414)||(7615597-7615995)
chr4 (16-413)||(7606584-7606999)
chr4 (14-234)||(7637612-7637832)
chr4 (16-234)||(7629166-7629384)
chr4 (250-414)||(7637414-7637578)
chr4 (14-233)||(7655494-7655710)
chr4 (258-414)||(7628968-7629124)
chr4 (253-407)||(7655748-7655902)
chr4 (14-140)||(39098306-39098432)
chr4 (366-405)||(39098047-39098086)
chr4 (352-408)||(7633703-7633759)
[»] chr7 (5 HSPs)
chr7 (14-414)||(8935455-8935873)
chr7 (19-399)||(8910525-8910919)
chr7 (14-175)||(8934514-8934675)
chr7 (14-166)||(8930059-8930211)
chr7 (310-408)||(8918826-8918924)
[»] chr8 (1 HSPs)
chr8 (115-233)||(15190642-15190757)
[»] chr6 (2 HSPs)
chr6 (110-232)||(6501058-6501176)
chr6 (112-140)||(11969547-11969575)
[»] chr3 (2 HSPs)
chr3 (14-230)||(8103025-8103241)
chr3 (94-233)||(40146823-40146959)


Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 7615995 - 7615597
Alignment:
Q  16 tcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615995 tcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggc 7615896  T
Q  116 atttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615895 atttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaaca 7615796  T
Q  216 gcccatacgatttcctttcgtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615795 gcccatacgatttcctttcgtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaa 7615696  T
Q  316 gagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7615695 gagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagtgcttttaactcacctttggtgctctgtg 7615597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 7606999 - 7606584
Alignment:
Q  16 tcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggc 115  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||    
T  7606999 tcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggc 7606900  T
Q  116 atttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaaca 215  Q
    |||||||||||||||||||||||||||||||  ||||||||  | |||||||||| |||||||||||||||||||||||||||||||||||| ||||||     
T  7606899 atttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaact 7606800  T
Q  216 gcccatacgatttcctttc------------------gtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaatagg 297  Q
     ||||||||||||||||||                    | || ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7606799 tcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtctaatgaggaaaaactttgtttatcaaatagg 7606700  T
Q  298 atatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactc 397  Q
     |||||||||||||||| ||||||||  ||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  7606699 ttatttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactc 7606600  T
Q  398 acctttggtgctctgt 413  Q
    ||||||||||||||||    
T  7606599 acctttggtgctctgt 7606584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 7637832 - 7637612
Alignment:
Q  14 catcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtg 113  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| |||||    
T  7637832 catcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtg 7637733  T
Q  114 gcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaa 213  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7637732 gcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaa 7637633  T
Q  214 cagcccatacgatttcctttc 234  Q
    | ||| |||||||||||||||    
T  7637632 cggcctatacgatttcctttc 7637612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 7629384 - 7629166
Alignment:
Q  16 tcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggc 115  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||| | |||||||||||||| ||||||||| |||| |||||||    
T  7629384 tcaaaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaaagtccgtgtggc 7629285  T
Q  116 atttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaaca 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||   || |||||||||||||||||| ||||||     
T  7629284 atttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaact 7629185  T
Q  216 gcccatacgatttcctttc 234  Q
     ||||||||||||||||||    
T  7629184 tcccatacgatttcctttc 7629166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 250 - 414
Target Start/End: Complemental strand, 7637578 - 7637414
Alignment:
Q  250 ttgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatg 349  Q
    ||||||||||| |||| |||||||||||||  |||||||||||||||| |||||||||||||||| ||||||||  ||||| | |||||||||||||| |    
T  7637578 ttgagtttttcatcgtttaatgaggaaaaatattgtttatcaaataggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacg 7637479  T
Q  350 atgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 414  Q
    | ||||| || |||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  7637478 aagagatcggcaccaccaaaatatcttctctacaagcacttttaactcacgtttggtgctatgtg 7637414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 7655494 - 7655710
Alignment:
Q  14 catcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtg 113  Q
    |||||||||| |||||||| |||||||| ||||||||||||||||| || || ||||| |     ||||||||||| || | ||||||| ||||   |||    
T  7655494 catcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacggacagtccacgtg 7655593  T
Q  114 gcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaa 213  Q
    ||||||||||||||| ||||||||||| |||||| ||||   ||||||||||||||||||  ||||||| || ||||||||||||||||||||  |||||    
T  7655594 gcatttcatcaattcgtgggctgaaatgtcacgtggttg---tcatcatcaaatatctaactccccaacgctggagcgttggtttccaaatggaattcaa 7655690  T
Q  214 cagcccatacgatttccttt 233  Q
    |  || ||||||||||||||    
T  7655691 cgacctatacgatttccttt 7655710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 414
Target Start/End: Complemental strand, 7629124 - 7628968
Alignment:
Q  258 ttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagatt 357  Q
    |||||| |||||||| |||||||||||||||||||||||  |||| || || ||||| |||||||| || ||||| ||||| ||||||||  | ||||||    
T  7629124 ttcgtcatctaatgatgaaaaactttgtttatcaaatagattattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagatt 7629025  T
Q  358 ggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 414  Q
    |||| |||||||||||||||||||||||||||| |||||||  ||||||||| ||||    
T  7629024 ggtaacatcaaaatatcttctctacaagcgcttctaactcatgtttggtgctatgtg 7628968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 253 - 407
Target Start/End: Original strand, 7655748 - 7655902
Alignment:
Q  253 agtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatg 352  Q
    ||||||||||| ||| |||| |||||||| | | ||||| | ||||||||||| || |||||  |||||||  | ||||| ||||||||| ||||||  |    
T  7655748 agtttttcgtcttctgatgacgaaaaactctttctatcagagaggatatttcactttacaaagaagaaaatcatgcaactgaaatcgaaagtcaatgcag 7655847  T
Q  353 agattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtg 407  Q
    |||||| |||||  |||||||||||||||||||||||||||||||| ||||||||    
T  7655848 agattgataccaaaaaaatatcttctctacaagcgcttttaactcatctttggtg 7655902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 39098432 - 39098306
Alignment:
Q  14 catcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtg 113  Q
    |||||||||| ||| | ||||||||||| || ||||| ||||| |||||||| ||||| | |||  |||| |||||||| || || ||  ||||  | ||    
T  39098432 catcaaaaccattgcttgcagttcaagttactgagcttgttgatggtattttcattggcttctcaatcaatcatgttgttgtcgatggtaagtcgttttg 39098333  T
Q  114 gcatttcatcaattcatgggctgaaat 140  Q
    ||||||||||||||||||| |||||||    
T  39098332 gcatttcatcaattcatggtctgaaat 39098306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 405
Target Start/End: Complemental strand, 39098086 - 39098047
Alignment:
Q  366 caaaatatcttctctacaagcgcttttaactcacctttgg 405  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  39098086 caaaatatcttctttacaagcacttttaactcacctttgg 39098047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 7633759 - 7633703
Alignment:
Q  352 gagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgc 408  Q
    |||||||||||| ||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  7633759 gagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttggtgc 7633703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 414
Target Start/End: Original strand, 8935455 - 8935873
Alignment:
Q  14 catcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtg 113  Q
    |||||||||| |||||||||||||||||||| ||| || ||||||||||||| ||||||||||| || ||||| | |||| |||||||| ||||||||||    
T  8935455 catcaaaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtg 8935554  T
Q  114 gcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaa 213  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||    
T  8935555 gcatttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttccggatggtgttcaa 8935654  T
Q  214 cagcccatacgatttcctttcgttt------------------acggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaata 295  Q
    | ||| |||||||||||||||  ||                  ||  |||||  |||||||||| |||||   |||| |||||||||||||| |||||||    
T  8935655 cggccaatacgatttcctttcactttggagcaacaaaagaatcactctgatgggttgagttttttgtcgttagatgatgaaaaactttgtttctcaaata 8935754  T
Q  296 ggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaac 395  Q
    | |||||||||||||||||||||||||| ||||| || ||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  8935755 gaatatttcatttcacaaaagagaaaatcgtacagctgaaattaaaaatcaatgaagagattggtaccatcaaaatatcttctctacaagcgcctttaac 8935854  T
Q  396 tcacctttggtgctctgtg 414  Q
    |||||||||||||| ||||    
T  8935855 tcacctttggtgctgtgtg 8935873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 8910525 - 8910919
Alignment:
Q  19 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  8910525 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt 8910624  T
Q  119 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 218  Q
    |||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    ||||||| |||    
T  8910625 tcattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacactagagcgttggtttccaaa----gttcaacggcc 8910720  T
Q  219 catacgatttcctttc------------------gtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggata 300  Q
     |||||||||||||||                  | | ||  |||||  ||||||||||| |||  |||||||||||||| |||||||||||||||| ||    
T  8910721 tatacgatttcctttcactttggagcaacaaaaggatcactctgatgggttgagtttttcatcgcttaatgaggaaaaacattgtttatcaaataggtta 8910820  T
Q  301 tttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcac 399  Q
    |||||||||||||| ||||||||  ||||| | |||||||||||||| || ||||| || |||| ||||||||||||||||||||| ||||||||||||    
T  8910821 tttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacgaagagatcggcaccaccaaaatatcttctctacaagcacttttaactcac 8910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 8934514 - 8934675
Alignment:
Q  14 catcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtg 113  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||||||| ||||||||||| || ||||| | |||| |||||||| ||||||||||    
T  8934514 catcaaaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtg 8934613  T
Q  114 gcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaac 175  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  8934614 gcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatttaaac 8934675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 8930059 - 8930211
Alignment:
Q  14 catcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtg 113  Q
    |||||||||| ||||||||| |||||||||| ||| || ||||||||||||| ||||||||||| || ||||| | |||| |||| ||| ||||||||||    
T  8930059 catcaaaaccattgttggcatttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgatggaaagtctgtgtg 8930158  T
Q  114 gcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaa 166  Q
     |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8930159 acatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaa 8930211  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 408
Target Start/End: Original strand, 8918826 - 8918924
Alignment:
Q  310 acaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgc 408  Q
    ||||| ||||||||  ||||||| ||||| ||| ||||    |||||||||||| ||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  8918826 acaaaggagaaaatcttacaactgaaatcaaaagtcaacacagagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttggtgc 8918924  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 15190642 - 15190757
Alignment:
Q  115 catttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaac 214  Q
    |||||||||||||||  ||||||||| |||||| ||| ||| ||||   ||||||||  ||| |||||||| || ||||  |||||||||||  ||||||    
T  15190642 catttcatcaattcactggctgaaatctcacgtggttcttgccatc---aaatatctgtacctccaacacttgaacgtttatttccaaatggaattcaac 15190738  T
Q  215 agcccatacgatttccttt 233  Q
      |||||||||||||||||    
T  15190739 gtcccatacgatttccttt 15190757  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 6501176 - 6501058
Alignment:
Q  110 tgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgt 209  Q
    |||||||||| |||| ||| ||||||||||| |||||| |||||||   | |||||||||| |||| |||| ||||||| |||| ||||||||||| | |    
T  6501176 tgtggcattttatcagttcctgggctgaaatttcacgtggttgttg---taatcaaatatccaaactcccatcactagaacgtt-gtttccaaatgatat 6501081  T
Q  210 tcaacagcccatacgatttcctt 232  Q
    ||| |   |||||||||||||||    
T  6501080 tcagcgttccatacgatttcctt 6501058  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 11969575 - 11969547
Alignment:
Q  112 tggcatttcatcaattcatgggctgaaat 140  Q
    |||||||||||||||||||||||||||||    
T  11969575 tggcatttcatcaattcatgggctgaaat 11969547  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 8103241 - 8103025
Alignment:
Q  14 catcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtg 113  Q
    ||||| |||| ||||| || || ||||| || ||| |||||||||| || ||||||||||   | || |||||||| || ||||| |||   || |  ||    
T  8103241 catcacaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaacttcggcatg 8103142  T
Q  114 gcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaa 213  Q
    | ||||||| ||||| ||||||||||| |||||| || |||||    |||||| ||| |||| | ||||||| || |||||||||||| ||||| |||||    
T  8103141 gtatttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccagatggtattcaa 8103042  T
Q  214 cagcccatacgatttcc 230  Q
       ||||||||||||||    
T  8103041 tgtcccatacgatttcc 8103025  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 40146823 - 40146959
Alignment:
Q  94 gttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgtt 193  Q
    ||||||||||||||    |||| |||||| |||||||||||  |||| || ||| ||||||| ||  ||||| |||| |||| |  ||| ||||| ||||    
T  40146823 gttgacggagagtccacatggcttttcattaattcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgtt 40146919  T
Q  194 ggtttccaaatggtgttcaacagcccatacgatttccttt 233  Q
    ||||||||| |||| ||||||| |||||||||||||||||    
T  40146920 ggtttccaagtggtattcaacatcccatacgatttccttt 40146959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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