View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21433_high_1 (Length: 664)
Name: NF21433_high_1
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21433_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Original strand, 40716117 - 40716536
Alignment:
| Q |
15 |
ggtgagtgaatgaagaaagaaagcaaagtaagaaggttttgacaagaaaatgagacaaagaaggtaaggttgtccgtccaggcggttgagagtttggttg |
114 |
Q |
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| T |
40716117 |
ggtgagtgaatgaagaaagaaagcaaagtaagaaggttttgacaagaaaatgagacaaagaaggtaaggttgtccgtccaagcggttgagagtttggttg |
40716216 |
T |
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| Q |
115 |
gtccaaggaaatcagcttggtttggttaggacatatgtcctctttccttaatatataggattttctttgagttcacgcgccgtttcttgttgtgttatgc |
214 |
Q |
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| T |
40716217 |
gtccaaggaaatcagcttggtttggttaggacatatgtcctctttccttaatatataggattttctttgagttcacgcgccgtttcttgttgtgttatgc |
40716316 |
T |
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| Q |
215 |
tcacaacattagtagggaggactatgtcatgcaatcnnnnnnnnncttttgaataatgttatatatctctgcattcaacttctagtgattaatctcttga |
314 |
Q |
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| T |
40716317 |
tcacaacattagtagggaggactatgtcatgcaatc-ttttttttcttttgaataatgttatat---tctacattc--cttctagtgattaatctcttga |
40716410 |
T |
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| Q |
315 |
gaatgataactgcctcaaaataatctcttgagataattggattttaattaaattgaaatctctagttagactatgatcgaagaaagttgttgatagttga |
414 |
Q |
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| T |
40716411 |
gaatgataactgcctcaaaataatctcttgagataattggattttaattaaattgaaatctctggttagactatgatcggagaaagttgttaataggtga |
40716510 |
T |
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| Q |
415 |
taagttaacagatggtgaatattata |
440 |
Q |
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| T |
40716511 |
taagttaacagatagtgaatattata |
40716536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 505
Target Start/End: Original strand, 40716534 - 40716591
Alignment:
| Q |
450 |
ataacttaacgaattgaatttgtatgatt--tgatgaaattaattgttgaacttaccg |
505 |
Q |
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| T |
40716534 |
ataacttagcgaattgaatttgtatgattgatgataaaattagttattgaacttaccg |
40716591 |
T |
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