View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21433_high_12 (Length: 305)
Name: NF21433_high_12
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21433_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 2615575 - 2615345
Alignment:
| Q |
6 |
agaagcaaaggggtcattaatccatcaccaatggcaccaatcaaaccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttca |
105 |
Q |
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| T |
2615575 |
agaagcaaaggggtcattagtccatcaccaatggcaccaatcaaaccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttca |
2615476 |
T |
|
| Q |
106 |
aagaaccattcttctttttcttatcattaatggaaacatttttctcaccatcaccaccacacatttgccaccacaaccaaaaagtattcataccaacgta |
205 |
Q |
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| T |
2615475 |
aagaaccattcttctttttcttatcattaatggaaacattttttt---------caccacacatttgccaccacaaccaaaaagtattcataccaacgta |
2615385 |
T |
|
| Q |
206 |
gtactgtgatgaaaaggaaaagcaacaaaatagagtatga |
245 |
Q |
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| T |
2615384 |
gtactgtgatgaaaaggaaaagcaaccaaatagagtatga |
2615345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 2679814 - 2679982
Alignment:
| Q |
11 |
caaaggggtcattaatccatcaccaatggcaccaatcaaaccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttcaaagaa |
110 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||||| |
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| T |
2679814 |
caaaggagtcattagtccatcaccaatggcaccaatcaaaccaaaagccatgaaaaaacaatcaagaacatcagcatgcatgaaaatggacctaaaagaa |
2679913 |
T |
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| Q |
111 |
ccattcttctttttcttatcattaatggaaacatttttctcaccatcaccaccacacatttgccaccacaac |
182 |
Q |
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| T |
2679914 |
ccatttttctttttcttaacattaatggaaacatttttct---gatcaccaccacccatttgcaatcacaac |
2679982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 2429421 - 2429285
Alignment:
| Q |
27 |
ccatcaccaatggcaccaatcaaaccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttcaaagaaccattcttctttttct |
126 |
Q |
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||||||||||| || |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
2429421 |
ccatcaccaatagccccaaaaaaaccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttct |
2429322 |
T |
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| Q |
127 |
tatcattaatggaaacatttttctcaccatcaccacc |
163 |
Q |
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| T |
2429321 |
tatcattaatggaaacatttttctgatcaccaccacc |
2429285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 2603106 - 2603242
Alignment:
| Q |
27 |
ccatcaccaatggcaccaatcaaaccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttcaaagaaccattcttctttttct |
126 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
2603106 |
ccatcaccaatggaaccaatcaaaccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttctttttct |
2603205 |
T |
|
| Q |
127 |
tatcattaatggaaacatttttctcaccatcaccacc |
163 |
Q |
| |
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|| ||||||||||||||||||||| | || ||||||| |
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| T |
2603206 |
taacattaatggaaacatttttctgatcaccaccacc |
2603242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 2647365 - 2647510
Alignment:
| Q |
8 |
aagcaaaggggtcattaatccatcaccaatggcaccaatcaaaccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttcaaa |
107 |
Q |
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||||||||| ||||||| ||||||||||||||| |||| |||||||||| |||| || || ||||||||||||||||||||||||||||||||||| ||| |
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| T |
2647365 |
aagcaaaggagtcattattccatcaccaatggctccaaacaaaccaaaagccattaagaaacaatcaagaacatcagcatgcatgaaaatggacttaaaa |
2647464 |
T |
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| Q |
108 |
gaaccattcttcttt---ttcttatcattaatggaaacatttttct |
150 |
Q |
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|||||||| |||||| |||||| ||||||||||||||||||||| |
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| T |
2647465 |
gaaccatttttctttttcttcttaacattaatggaaacatttttct |
2647510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 2575090 - 2575226
Alignment:
| Q |
27 |
ccatcaccaatggcaccaatcaaaccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttcaaagaaccattcttctttttct |
126 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
2575090 |
ccatcaccaatggaaccaatcaaaccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttctttttct |
2575189 |
T |
|
| Q |
127 |
tatcattaatggaaacatttttctcaccatcaccacc |
163 |
Q |
| |
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| | | |||| |||||||||||| | || ||||||| |
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| T |
2575190 |
tcttaacaatgtaaacatttttctgatcaccaccacc |
2575226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 2445852 - 2445716
Alignment:
| Q |
14 |
aggggtcattaatccatcaccaatggcaccaatcaaaccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttcaaagaacca |
113 |
Q |
| |
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|||| |||||| ||||||||||| || |||| ||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||| |
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| T |
2445852 |
agggatcattatgccatcaccaatagccccaaatgaaccaaaaaccattaaaaaccagtctagaacatcagcatgcatgaaaatggacttaaaagaacca |
2445753 |
T |
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| Q |
114 |
ttcttctttttcttatcattaatggaaacatttttct |
150 |
Q |
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|| |||||||||||| ||||||| ||||||||||||| |
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| T |
2445752 |
tttttctttttcttaacattaatagaaacatttttct |
2445716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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