View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21433_high_7 (Length: 405)
Name: NF21433_high_7
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21433_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 6862759 - 6862392
Alignment:
| Q |
17 |
agaatgaagatgtggcaggtggcaaaatcagtgtagctttgtacatagagaaaacgtgtctgttgttccttcnnnnnnnnnnnnnnnnncctgacacata |
116 |
Q |
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| T |
6862759 |
agaatgaagatgtggcaggtggcaaaatcagtgtagctttgtacatagagaaaacgtgtctgttgttcctt-----------atatatacctgacacata |
6862671 |
T |
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| Q |
117 |
aacacatgatttgataccaataattatgaatcttgcaatgaacatttagaggtttcaaaatggcaacgtatgtcaatctggcacactaatatttaagtgc |
216 |
Q |
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| T |
6862670 |
aacacatgatttgataccaataattatgaatcttgcaatgaacatttagaggtttcaaaatggcaacgtatatcaatctggcacactaatatttaagtgc |
6862571 |
T |
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| Q |
217 |
agcatactatataatagtatcaatttaaagagagaaaattataagcaaatgtgctaatgacaccacataaacaaccattatctcctttactttacagtca |
316 |
Q |
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| T |
6862570 |
agcatactatataatagtatcaatttaaagagagaaaattataagcaaatgtgctaatgacaccacataaacaaccattatctcctttactttacagtca |
6862471 |
T |
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| Q |
317 |
caagtctgtttttaatgtgataccaagcgtcggcatatcctaaggtatatatttcaacccaaaatcaaacccttctctg |
395 |
Q |
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| T |
6862470 |
caagtctgtttttaatgtaataccaagcgtcggcatatcctaaggtacatatttcaacccaaaatcaaacccttctctg |
6862392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 358
Target Start/End: Complemental strand, 6857605 - 6857503
Alignment:
| Q |
257 |
ataagcaaatgtgctaatgacaccacataaacaaccattatctcctttactttacagtcacaagtctgtttt-taatgtgataccaagcgtcggcatatc |
355 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||| || | ||||||| ||||| | |||||||| |||||||||||||| ||||||| |||| |
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| T |
6857605 |
ataagcaaatgtgctaatgacaccacataaaaaactattatcaccatcactttaccgtcactaatctgttttctaatgtgataccaaccgtcggcgtatc |
6857506 |
T |
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| Q |
356 |
cta |
358 |
Q |
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||| |
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| T |
6857505 |
cta |
6857503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 6857768 - 6857700
Alignment:
| Q |
114 |
ataaacacatgatttgataccaataattatgaatcttgcaat-gaacatttagaggtttcaaaatggca |
181 |
Q |
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||||||||||||| ||| |||||||||||||||| ||| | | ||||||| |||||||||||||||| |
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| T |
6857768 |
ataaacacatgatatgaaaccaataattatgaattttgtagtaaaacatttgaaggtttcaaaatggca |
6857700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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