View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21433_high_8 (Length: 361)
Name: NF21433_high_8
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21433_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 30503489 - 30503844
Alignment:
| Q |
1 |
tctttaatttctgctacaccaagcagaatacatacatacatacaatacaacaatttaatgacaaccagaaatctttcacaaaatttaactgacaaataaa |
100 |
Q |
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| T |
30503489 |
tctttaatttctgctacaccaagcagaatacatacatacatacaatacaacaaattaatgacaaccagaaatctttcacaaaatttaactgacaaataaa |
30503588 |
T |
|
| Q |
101 |
taaaacctaaacctactagctactactagtacttaaaattaattagacaattaataatattcatgacttgagataaataaagatagttttttccatggaa |
200 |
Q |
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| T |
30503589 |
taaaacctaaacctactagctactactagtacttaaaattaattagacaattaataatattcatgacttgagataaataaagatagttttttccatggaa |
30503688 |
T |
|
| Q |
201 |
tatgagaatagccattttattgagttgcacctggaggtggaagctgatgttgatggtgatgatgaagatgaagaggcaattgcaattgcattggttgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30503689 |
tatgagaatagccattttattgagttgcacctggaggtggaagctgatgttgatggtgatgatgaagatgaagaggcaattgcaattgcattggttgttg |
30503788 |
T |
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| Q |
301 |
ctgctgaagctgaagctgttgtggttgttgttgtggtggacgtttcctttgcttct |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30503789 |
ctgctgaagctgaagctgttgtggttgttgttgtggtggacgtttccttttcttct |
30503844 |
T |
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