View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21433_high_9 (Length: 346)
Name: NF21433_high_9
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21433_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 171 - 341
Target Start/End: Complemental strand, 39943192 - 39943022
Alignment:
| Q |
171 |
cagcaatattttctaaaaagttgctaactcatcatcctatcaccataattgagaacatagaggtttcagttgcttttatactgtatagtttataatccaa |
270 |
Q |
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| T |
39943192 |
cagcaatattttctaaaaagttgctaactcatcatcctatcaccataattgagaacatagaggtttcggttgcttttatactgtatagtttataatccaa |
39943093 |
T |
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| Q |
271 |
atgcatcctttgttaattccttttttaattctatcattaattaaataaaggcgggtcacttacttcctttg |
341 |
Q |
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| T |
39943092 |
atgcatcctttgttaattccttttttaattctatcattaataaaataaaggcgggtcacttacttcctttg |
39943022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 39943346 - 39943258
Alignment:
| Q |
17 |
atcaacagcgaaatattgattatatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
105 |
Q |
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| T |
39943346 |
atcaacagcgaaatattgattatatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
39943258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 28739602 - 28739690
Alignment:
| Q |
17 |
atcaacagcgaaatattgattatatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
105 |
Q |
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| T |
28739602 |
atcaacagcgaaatattgattatatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
28739690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 28749544 - 28749632
Alignment:
| Q |
17 |
atcaacagcgaaatattgattatatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
105 |
Q |
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| T |
28749544 |
atcaacagcgaaatattgattatatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
28749632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 28753557 - 28753645
Alignment:
| Q |
17 |
atcaacagcgaaatattgattatatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
105 |
Q |
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| T |
28753557 |
atcaacagcgaaatattgattatatatggacatatcatcccaacccccacataggtagcagaaaaatcaaagtaaaacctgttatgtac |
28753645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 28739754 - 28739860
Alignment:
| Q |
172 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
263 |
Q |
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||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
28739754 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattgagaacatagaggtttcagttttggtcaacttttatattgtatagtttat |
28739853 |
T |
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| Q |
264 |
aatccaa |
270 |
Q |
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| T |
28739854 |
aatccaa |
28739860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 28749696 - 28749802
Alignment:
| Q |
172 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
263 |
Q |
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| T |
28749696 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattgagaacatagaggtttcagttttggtcaacttttatattgtatagtttat |
28749795 |
T |
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| Q |
264 |
aatccaa |
270 |
Q |
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||||||| |
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| T |
28749796 |
aatccaa |
28749802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 28753709 - 28753815
Alignment:
| Q |
172 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
263 |
Q |
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||||||||| |||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| |
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| T |
28753709 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattaagaacatagaggtttcagtttcggtcagcttttatattgtgtagtttat |
28753808 |
T |
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| Q |
264 |
aatccaa |
270 |
Q |
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||||||| |
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| T |
28753809 |
aatccaa |
28753815 |
T |
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