View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21433_low_10 (Length: 357)

Name: NF21433_low_10
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21433_low_10
NF21433_low_10
[»] chr5 (3 HSPs)
chr5 (199-336)||(7927164-7927301)
chr5 (79-195)||(30964673-30964797)
chr5 (84-130)||(35836303-35836349)
[»] chr4 (1 HSPs)
chr4 (79-193)||(26144947-26145069)
[»] chr1 (2 HSPs)
chr1 (84-141)||(29633680-29633737)
chr1 (80-186)||(51946197-51946312)
[»] chr8 (2 HSPs)
chr8 (86-193)||(41076478-41076595)
chr8 (86-193)||(42009169-42009285)
[»] chr3 (2 HSPs)
chr3 (80-131)||(6102022-6102073)
chr3 (144-193)||(6100982-6101031)
[»] chr6 (1 HSPs)
chr6 (80-121)||(31047199-31047240)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 199 - 336
Target Start/End: Complemental strand, 7927301 - 7927164
Alignment:
Q  199 ttatttactagggtggttgggtaataacagcccaggaaggtgggaaaattatcccgctcattggcgtagaaatcaaagtctcactaatttgatttcactt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927301 ttatttactagggtggttgggtaataacagcccaggaaggtgggaaaattatcccgctcattggcgtagaaatcaaagtctcactaatttgatttcactt 7927202  T
Q  299 tgtgatgaatctcaaactcacactctccttcttcccat 336  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7927201 tgtgatgaatctcaaactcacactctccttcttcccat 7927164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 30964673 - 30964797
Alignment:
Q  79 tcaaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaacta----ccat----gggtgtatcagagtgtgttgccagcta 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    ||||     ||||||  ||||||||||||||||||    
T  30964673 tcaaggtttatatgagttttgactaaactacccttcattaaaagatgaaataccaaaactatcctccatatggaggtgtacaagagtgtgttgccagcta 30964772  T
Q  171 agtgtgttcacctatcaggactcat 195  Q
    |||||||||||||||||||||||||    
T  30964773 agtgtgttcacctatcaggactcat 30964797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 35836303 - 35836349
Alignment:
Q  84 gtttatatgagttttgactaaactacccttcattaaaagataaaata 130  Q
    |||||||||| || |||| |||||||||||||||||||||| |||||    
T  35836303 gtttatatgaattatgacaaaactacccttcattaaaagatgaaata 35836349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 26145069 - 26144947
Alignment:
Q  79 tcaaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaacta----ccat----gggtgtatcagagtgtgttgccagcta 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    ||||     ||||||  ||||||||||||||||||    
T  26145069 tcaaggtttatatgagttttgactaaactacccttcattaaaagatgaaataccaaaactatcctccatatggaggtgtacaagagtgtgttgccagcta 26144970  T
Q  171 agtgtgttcacctatcaggactc 193  Q
    |||||||||||| ||||||||||    
T  26144969 agtgtgttcacccatcaggactc 26144947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 29633680 - 29633737
Alignment:
Q  84 gtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactacc 141  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  29633680 gtttatatgggttttgacaaaactacccttcattaaaagatgaaataccaaaactacc 29633737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 51946197 - 51946312
Alignment:
Q  80 caaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactaccat---------gggtgtatcagagtgtgttgccagcta 170  Q
    ||||||||||||| |||||||| |||||||||||||||||||||  |||||| ||||||| |||         |||||||| || |||||||||  ||||    
T  51946197 caaggtttatatgggttttgacaaaactacccttcattaaaagaagaaatactaaaactatcatgccacatgggggtgtataagggtgtgttgcatgcta 51946296  T
Q  171 agtgtgttcacctatc 186  Q
    ||||||||||||||||    
T  51946297 agtgtgttcacctatc 51946312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 41076478 - 41076595
Alignment:
Q  86 ttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactaccat----------gggtgtatcagagtgtgttgccagctaagtgt 175  Q
    ||||||| |||||||| |||||||||||||||||||| | |||||||||||||||| |          |||||||  |||||||||||||| |||||  |    
T  41076478 ttatatgggttttgacaaaactacccttcattaaaaggtgaaataccaaaactaccctgccacatggggggtgtacaagagtgtgttgccacctaagcat 41076577  T
Q  176 gttcacctatcaggactc 193  Q
    ||||||||||||||||||    
T  41076578 gttcacctatcaggactc 41076595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 42009169 - 42009285
Alignment:
Q  86 ttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactac-------catggg--tgtatcagagtgtgttgccagctaagtgtg 176  Q
    ||||||| |||||||| |||||||||||||||||||| | ||||||| |||||||       ||||||  ||||  |||||||||||||| |||||  ||    
T  42009169 ttatatgggttttgacaaaactacccttcattaaaaggtgaaataccgaaactaccctgccacatggggatgtacaagagtgtgttgccacctaagcatg 42009268  T
Q  177 ttcacctatcaggactc 193  Q
    |||||||||||||||||    
T  42009269 ttcacctatcaggactc 42009285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 6102073 - 6102022
Alignment:
Q  80 caaggtttatatgagttttgactaaactacccttcattaaaagataaaatac 131  Q
    ||||||||||||| |||||||| ||||||| |||||||||||||| ||||||    
T  6102073 caaggtttatatgggttttgacaaaactactcttcattaaaagatgaaatac 6102022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 6101031 - 6100982
Alignment:
Q  144 gggtgtatcagagtgtgttgccagctaagtgtgttcacctatcaggactc 193  Q
    |||||||| || | |||||||||||||| |||||||||||||||| ||||    
T  6101031 gggtgtataagggggtgttgccagctaaatgtgttcacctatcagcactc 6100982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 31047199 - 31047240
Alignment:
Q  80 caaggtttatatgagttttgactaaactacccttcattaaaa 121  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  31047199 caaggtttatatgggttttgacaaaactacccttcattaaaa 31047240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University