View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21433_low_13 (Length: 328)
Name: NF21433_low_13
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21433_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 6578614 - 6578934
Alignment:
| Q |
1 |
tatataaaggatgcctatgtttctttcnnnnnnnnntaaaggatgcctatgttgtcgcctttattttgtgatgttccacttcaacagtcatgtgcttaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6578614 |
tatataaaggatgcctatgtttctttcaaaaaaaa-taaaggatgcctatgttgtcgcctttatttagtgatgttccacttcaacagtcatgtgcttaca |
6578712 |
T |
|
| Q |
101 |
attgaacagaattctaaagtgaaagttcagttgaactctctcaaatcatgttaaatcacacggcgagattactcctgaacagataaccaaatcaaattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6578713 |
attgaacagaattctaaagtgaaagttcagttgaactctctcaactcatgttaaatcacacagcgagattactcctgaacagataaccaaatcaaattga |
6578812 |
T |
|
| Q |
201 |
aacaacagatgttgacaatttgaagtcacttaaaatactacagttttgctttgaattttacagcatgtgaaagttatccctacaatcacaattacaacga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6578813 |
aacaacagatgttgacaatttgaagtcacttaaaatactacagttttgctttgaattttacagcatgtgaaagttatccctacaatcacaattacaacaa |
6578912 |
T |
|
| Q |
301 |
acttcatactagcgatattctt |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6578913 |
acttcatactagcgatattctt |
6578934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University