View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21433_low_16 (Length: 299)
Name: NF21433_low_16
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21433_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 10005843 - 10005579
Alignment:
| Q |
15 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005843 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
10005744 |
T |
|
| Q |
115 |
aaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005743 |
aaaacatcggcaacaccagaaccttcactaccaggaagccaagcaaccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
10005644 |
T |
|
| Q |
215 |
tgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtcca |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005643 |
tgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtcca |
10005579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 9999695 - 9999431
Alignment:
| Q |
15 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9999695 |
caaaggatcataatgagaatcaccaacattcattggtaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
9999596 |
T |
|
| Q |
115 |
aaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9999595 |
aaaacatcggcaacaccagaaccttcactaccaggaagccaatcatccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
9999496 |
T |
|
| Q |
215 |
tgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtcca |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9999495 |
tgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtcca |
9999431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 9992740 - 9992489
Alignment:
| Q |
15 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||| |
|
|
| T |
9992740 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtcctagcaagcttaccagtaaatccataatcaccaaac |
9992641 |
T |
|
| Q |
115 |
aaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
214 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||| |||| || ||||| |||||||| | ||||||||||||||| ||| ||||||||| | |
|
|
| T |
9992640 |
aaaacatcagcaacaccagtaccttcactaccaggaagccaagcagcaacgagtccgtcaattttgttaagatatggttgtatggcaacaggtctaccag |
9992541 |
T |
|
| Q |
215 |
tgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttc |
266 |
Q |
| |
|
||| ||||||||||||||||||||||| || ||||||||||| ||| ||||| |
|
|
| T |
9992540 |
tgactaacacaacgacacatttcactctgccgcatacattgtttattgtttc |
9992489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 10014184 - 10013945
Alignment:
| Q |
15 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
114 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| || ||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |
|
|
| T |
10014184 |
caaaggatcataatgacgatccccaacattcatcggtaactgatggacagtcttaaaccatgtccttgaaagcttaccagtaaatccataatcaccaaac |
10014085 |
T |
|
| Q |
115 |
aaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
214 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||| | || || ||||| ||||| || | |||| ||||||||||||||| |||||| || | |
|
|
| T |
10014084 |
aaaacatcagcaacaccagtaccttcactaccaggaagccaagccgcaacgagtccgtcaatgttgtgaagaaatggttgtataacaacaggtcttccag |
10013985 |
T |
|
| Q |
215 |
tgattaacacaacgacacatttcactccgctgcatacatt |
254 |
Q |
| |
|
|||||| ||||| |||||||||||| ||| ||||||||| |
|
|
| T |
10013984 |
agattaagacaacaacacatttcactgcgccgcatacatt |
10013945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 33353239 - 33353383
Alignment:
| Q |
22 |
tcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacat |
121 |
Q |
| |
|
|||||||||| ||| |||||||||||||| | ||||||||| | || |||||||| |||||||| || || || || |||||||||||||| ||||||| |
|
|
| T |
33353239 |
tcataatgaggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttcctgtgaaaccataatcaccaaataaaacat |
33353338 |
T |
|
| Q |
122 |
ccgcaacaccagaaccttcactaccaggaagccaaccagccacaa |
166 |
Q |
| |
|
| || ||||| ||||||||||| || ||||||||||| |||| |
|
|
| T |
33353339 |
cagccacaccttgtccttcactacctggtagccaaccagcaacaa |
33353383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 11244300 - 11244412
Alignment:
| Q |
19 |
ggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaa |
118 |
Q |
| |
|
||||| || |||| ||| |||||||||||||| | ||||| |||| || ||||||||||||| ||||||||| || || ||||| |||||||| | || |
|
|
| T |
11244300 |
ggatcgtagtgaggatctccaacattcattgggagttgatcgacagatttgaaccatgtccttgcaagtttaccagtgaaaccatagtcaccaaaaagaa |
11244399 |
T |
|
| Q |
119 |
catccgcaacacc |
131 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
11244400 |
catctgccacacc |
11244412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 35994438 - 35994277
Alignment:
| Q |
18 |
aggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaa |
117 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| | ||| || || ||||| ||||||||||||| ||||| || || ||| || | |||||| | | | |
|
|
| T |
35994438 |
aggatcataatgtttatcgccaacattcattggaagctggtctactgtcttgaaccatgtccttgccagtttgccagtgaattcaaagtcaccatagaga |
35994339 |
T |
|
| Q |
118 |
acatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaatttt |
179 |
Q |
| |
|
|| || |||||||| |||||| | ||||||||||| ||||||||||| | |||||||| |
|
|
| T |
35994338 |
acgtcggcaacaccttggccttcagtgccaggaagccatgcagccacaagtgcatcaatttt |
35994277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University