View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21433_low_2 (Length: 546)
Name: NF21433_low_2
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21433_low_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 15 - 546
Target Start/End: Complemental strand, 3480865 - 3480334
Alignment:
| Q |
15 |
acctgtggaggaactgtcacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttataggccatcaggtatactac |
114 |
Q |
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| T |
3480865 |
acctgtggaggaactgtcacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttataggccatcaggtatactac |
3480766 |
T |
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| Q |
115 |
aacgagtatttagtttctttcttctgttgttatttgtttaagtgctaaatgacttgttatcttttcaacttatatcaaatttatgttatgtgcaatggtt |
214 |
Q |
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| T |
3480765 |
aacgagtatttagtttctttcttctgttgttatttgtttaagtgctaaatgacttgttatcttttcaacttatatcaaatttatgttatgtgcaatggtt |
3480666 |
T |
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| Q |
215 |
acattatatctcatttattgtaattttagttgattcatcgttttgaatgctaaatttgtgtttgctatcgttatcaattccaggacaaagagttgcggta |
314 |
Q |
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| T |
3480665 |
acattatatctcatttattgtaattttagttgattcatcgttttgaatgctaaatttgtgtttgccatcgttatgaattccaggacaaagagttgcggta |
3480566 |
T |
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| Q |
315 |
tcgctttatctataatcattttccaagtttacaagaggaggtaatgattcttgttggaggttttgttgcaaggttgtgattgaattgcattgtgatttta |
414 |
Q |
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| T |
3480565 |
tcgctttatctataatcattttccaagtttacaagaggaggtaatgattcttgttggaggtcttgttgcaaggttgtgattgaattgcattgtgatttta |
3480466 |
T |
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| Q |
415 |
aattaaaccaaaagcagcataaaatttgtagtgaaatttctttagaatagagttttctttctttttcatggtttatttgacttgcacataaatttccagg |
514 |
Q |
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| T |
3480465 |
agttaaaccaaaagcagcataaaatttgtagtgaaatttctttagaatagagttttctttctttttcatgatttatttgacttgcacataaatttccagg |
3480366 |
T |
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| Q |
515 |
acctcataggaaaaacagatgttgaaattttc |
546 |
Q |
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| T |
3480365 |
acctcataggaaaaacggatgttgaaattttc |
3480334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 3456478 - 3456354
Alignment:
| Q |
15 |
acctgtggaggaactgtcacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttataggccatcaggtatactac |
114 |
Q |
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| T |
3456478 |
acctgtggaggaactgtcacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttattggccatcaggtatattac |
3456379 |
T |
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| Q |
115 |
aacgagtatttagtttctttcttct |
139 |
Q |
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| T |
3456378 |
agtgagtattgtgtttatttcttct |
3456354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 292 - 546
Target Start/End: Complemental strand, 3455983 - 3455732
Alignment:
| Q |
292 |
ttccaggacaaagagttgcggtatcgctttatctataatcattttccaagtttacaagaggaggtaatgattcttgttggaggttttgttgcaaggttgt |
391 |
Q |
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| T |
3455983 |
ttccaggacaaagagttgcgctatcgttttatctataatcattttccaagtttacaagaagaggtaatgatttcttttgaagctcttgttgcaaggttat |
3455884 |
T |
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| Q |
392 |
gattgaattgcattgtgattttaaattaaaccaaaagcagcataaaatttgtagtgaaatttctttagaatagagttttctttctttttcatggtttatt |
491 |
Q |
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|| || | || | |||||| |||||||||||||||||||||||||| | |||| ||||||| |||||||| |||||| | |||||| ||| | |
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| T |
3455883 |
-atgcaa---ctttataattttatattaaaccaaaagcagcataaaatttctgcagaaacttctttaaaatagagtattctttgctcttcatgagttaat |
3455788 |
T |
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| Q |
492 |
tgacttgcacataa-atttccaggacctcataggaaaaacagatgttgaaattttc |
546 |
Q |
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| T |
3455787 |
ttacttgctcgtaatttttccaggacattataggaaaaacagatgtcgaaattttc |
3455732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 3456292 - 3456210
Alignment:
| Q |
197 |
atgttatgtgcaatggttacattatatctcatttattgtaattttagttgattcatcgttttgaatgctaaatttgtgtttgc |
279 |
Q |
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| T |
3456292 |
atgttatgtgtaatggttaaattatatatcttctatttaagttttagttgattcatcattttggatgctaaatttgtttttgc |
3456210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 48694335 - 48694426
Alignment:
| Q |
15 |
acctgtggaggaactgtcacagattcttaagagagcagataatttcttacattttatacttcaaaatgcacctgttgttataggccatcagg |
106 |
Q |
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|||||| || ||||| || || ||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||| |
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| T |
48694335 |
acctgttgaagaactctctcaaattctgaagagagcagataatttcttgcattttatactccaaaatgctcctgttgttattggccatcagg |
48694426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 48694423 - 48694487
Alignment:
| Q |
295 |
caggacaaagagttgcggtatcgctttatctataatcattttccaagtttacaagaggaggtaat |
359 |
Q |
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| T |
48694423 |
caggacaaagagttgcggtatcgctttatctacaaccactttccaagtttgcatgaggaggtaat |
48694487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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