View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21433_low_3 (Length: 503)
Name: NF21433_low_3
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21433_low_3 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 12 - 482
Target Start/End: Original strand, 19369361 - 19369834
Alignment:
| Q |
12 |
acagaggttgtggttctaagcttgttcaactcagatacaatcgagagataaagacaacaaagtttctacctaaaattaccatcagtacaatgattttgct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19369361 |
acagaggttgtggttctaagcttgttcaactcagatacaatcgagagataaagacaacaaagtttctacctaaaattaccatcagtacaatgattttgct |
19369460 |
T |
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| Q |
112 |
aaaatacaacaaattcaaggaacaccaataatgagctgggaaaattata----tagccaggagaatgcatagcagaactaaactattgcgtataacagga |
207 |
Q |
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| T |
19369461 |
aaaatacaacaaattcaaggaacaccaat--tgagctgggaaaattatatatatagccaggagaatgcatagcagaactaaactattgcgtataacagga |
19369558 |
T |
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| Q |
208 |
gttattaatgtttgtgacaagcatatatcactaaaagactccataaagacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19369559 |
gttattaatgtttgtgacaagcatatatcactaaaagactccataaagacaaaactatagttcaagatgtagaattcaaagaaagatcaatgtttctaaa |
19369658 |
T |
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| Q |
308 |
gcatatatcataaaaagcaaaggataggttattgtacacaaacaaaca-ttctcaagattgagaatgaattcagaaagtagagtcacggacttattggag |
406 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19369659 |
gcatatatcataaaaatcaaaggataggttattgtacacaaacaaacatttctcaagattgagaatgaattcagaaagtagagtctcggacttattggag |
19369758 |
T |
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| Q |
407 |
ttattataatttttgtgacaagcataaggctgctgctattgcacactctatccattatcattcaaataaataaaag |
482 |
Q |
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| T |
19369759 |
ttatgataattgttgtgacaagcttaaggctgctgctattgcacgctctatccattatcattcaaataaataaaag |
19369834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 238 - 387
Target Start/End: Original strand, 49856258 - 49856405
Alignment:
| Q |
238 |
ctaaaagactccataaagacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaagcatatatcataaaaagcaaaggataggtt |
337 |
Q |
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||||||||| ||||||||||||||||| ||||| |||| || ||| ||||| | |||| ||||||||||||||||||| |||| |||||||| || |
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| T |
49856258 |
ctaaaagaccccataaagacaaaggtacagttccagatatagaatcgaaagaca--tcaacatttctaaagcatatatcatcaaaattaaaggataaatt |
49856355 |
T |
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| Q |
338 |
attgtacacaaacaaacattctcaagattgagaatgaattcagaaagtag |
387 |
Q |
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| T |
49856356 |
attgtacacaaacaaacagtctcaagattcagaatgaatttataaagtag |
49856405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 1855 - 1912
Alignment:
| Q |
255 |
gacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaagcata |
312 |
Q |
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| T |
1855 |
gacaaatgtatagttccagatatataatttaaagaaagatcaatgtttttaaagcata |
1912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 3401 - 3458
Alignment:
| Q |
255 |
gacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaagcata |
312 |
Q |
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|||||| ||||||||| |||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
3401 |
gacaaatgtatagttccagatatataatttaaagaaagatcaatgtttttaaagcata |
3458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 20130826 - 20130760
Alignment:
| Q |
238 |
ctaaaagactccataaagacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttct |
304 |
Q |
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|||||||||| | |||||||||||||||||||| |||| |||||||||| |||||||||||||| |
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| T |
20130826 |
ctaaaagacttcctaaagacaaaggtatagttccagataatgaattcaaagagagatcaatgtttct |
20130760 |
T |
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