View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21433_low_4 (Length: 460)
Name: NF21433_low_4
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21433_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 43906517 - 43906095
Alignment:
| Q |
11 |
cataggtgattcatgtgacattttggaacaaaagaaaaagaggaatggtcatgaaatttgtcagtgccagaatctataaattgaaagacgtaaagaatga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43906517 |
cataggtgattcatgtgacattttggaacaaaagaaaaagaggaatggtcatgaaatttgtcagtgccagaatctataaattgaaagacgtaaagaatga |
43906418 |
T |
|
| Q |
111 |
aagaaaaatgaaaggaatgaaagggtatttgtgttagagagcacgtggttgttacnnnnnnntaagagacttctatgaaagtttcctacacaagaaaccg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43906417 |
aagaaaaatgaaaggaatgaaagggtatttgtgttagagaaca------------aaaaaaataagagacttctatgaaagtttcttacacaagaaaccg |
43906330 |
T |
|
| Q |
211 |
ataaatatgcatcattcttctaatcaccaaaaataaataaaatacgaaattggctttgctttctgtataaaccaaatcataaatcatgtgtgtggtaaat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43906329 |
ataaatatgcatcattcttctaatcaccaaaaataaataaaatacgaaattggctttgctttctgtataaaccaaatcataaatcatgtgtgtggtaaat |
43906230 |
T |
|
| Q |
311 |
agattttccggtgtaattgtgtcagtgacacgtgacgcgtttatcaattgtctgatctcaaaacaacagttgggattaaatattgcgtgcactcggactg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43906229 |
agattttccggtgtaattgtgtcagtgacacgtgacgcgtttatcaattgtctgatctcaaaacaacagttgggattaaatattacgtgcactcggactg |
43906130 |
T |
|
| Q |
411 |
tagaccaccgtgattggtttatgtgagtgtgtagt |
445 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
43906129 |
cagacgaccgtgattggtttatgtgagtgtgtagt |
43906095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University