View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21433_low_5 (Length: 459)
Name: NF21433_low_5
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21433_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Original strand, 46308762 - 46309194
Alignment:
| Q |
11 |
aattcgatggactacaacctcagcaggataacaatttgtctaatgctcaatggtttgttcgttttggggatgtcatatccaagagctctctttgactcag |
110 |
Q |
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| T |
46308762 |
aattggatggactacaacctcagcaggataacaacttgtctaatgctcaatggtttgttcgttttggggatgtcatatccaagagctctctttgactcag |
46308861 |
T |
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| Q |
111 |
catcttcccattgtgattcatgactcgattaagacaaaagttaatgaagggttaaagtaaagactactcttttcagtgttttgatatttccataattata |
210 |
Q |
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| T |
46308862 |
catcttcccattgtgattcatgactcgattaagacaaaagttaatgaagggttaaagtaaagactactcttttcagtgttttgatatttccataattata |
46308961 |
T |
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| Q |
211 |
tataaccttaacaaatagaaaggatgaccatttgggtttataaaacaatagaaagaaagcttaaggaattttctaatgcatattgcagaagcacttgttc |
310 |
Q |
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| T |
46308962 |
tataaccttaaaaaatagaaaggatgaccatttgggtttataaaacaatagaaagaaagcttaaggaattttctaatgcatattgcagaagcacttgttc |
46309061 |
T |
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| Q |
311 |
ctagatattagttggtttgggtataaatatccattattttactttttggatcgacgcttattttgtgaacggtgatatggttgtatggtgtaattaaata |
410 |
Q |
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| T |
46309062 |
ctagatattagttggtttgggtataaatatccattattttactttttggatcgacgcttattttgtgaacggtgatatggttgtatggtgtaattaaata |
46309161 |
T |
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| Q |
411 |
gcaacaccttatgtgtttatgttggaaactttt |
443 |
Q |
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| T |
46309162 |
gcaacaccttatgtgtttatgttggaaactttt |
46309194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 343 - 443
Target Start/End: Original strand, 46309203 - 46309304
Alignment:
| Q |
343 |
attattttactttttggatcgacgcttattttgtgaacggtgatatggttgtatggtgtaattaaatagcaacacc-ttatgtgtttatgttggaaactt |
441 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
46309203 |
attattttactttttggatcgacgcttattttgtgaccgttgatatggttgtatggtgtaattaaatagcaacacctttatgtgtttatgttggaaattt |
46309302 |
T |
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| Q |
442 |
tt |
443 |
Q |
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|| |
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| T |
46309303 |
tt |
46309304 |
T |
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