View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21433_low_7 (Length: 434)

Name: NF21433_low_7
Description: NF21433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21433_low_7
NF21433_low_7
[»] chr3 (4 HSPs)
chr3 (11-112)||(19923341-19923442)
chr3 (56-184)||(19939192-19939335)
chr3 (379-418)||(19939726-19939765)
chr3 (216-252)||(19923490-19923526)
[»] chr1 (3 HSPs)
chr1 (11-93)||(4240009-4240091)
chr1 (283-363)||(4240558-4240634)
chr1 (116-184)||(4240216-4240282)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 19923341 - 19923442
Alignment:
Q  11 cataggccagattatataattatataaagattaaattgatttcgtattaattcatcaaatctatatataattcaaacatggatcgatgttcaattatcat 110  Q
    |||||||||| |||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  19923341 cataggccagcttatatcattatataaagatcaaattaatttcatattaattcatcaaatctatatataattaaaacatggatcgatgtttaattatcat 19923440  T
Q  111 ga 112  Q
    ||    
T  19923441 ga 19923442  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 19939192 - 19939335
Alignment:
Q  56 attaattcatcaaatctatatataattcaaacatggatcgatgttcaattatcatgatca-------------ttgtcttatttcaaaacaacacaatta 142  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||             ||||| | |||||||||||||||||||    
T  19939192 attaattcatcaaatctatatacaattaaaacatgaatcgatgttcaattatcatgatcatcaccaccaaacgttgtcctctttcaaaacaacacaatta 19939291  T
Q  143 ccacggtgg--atatatagatcatatattaattagaacatctat 184  Q
    | | |||||  ||||||||||||||||||||||| |||||||||    
T  19939292 ctatggtggatatatatagatcatatattaattataacatctat 19939335  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 418
Target Start/End: Original strand, 19939726 - 19939765
Alignment:
Q  379 agaaagaacagtggacagtggtaagagaaagaataataac 418  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  19939726 agaaagaacagtggatagtggtaagagaaagaataataac 19939765  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 19923490 - 19923526
Alignment:
Q  216 ttcattcaaacaaacagtttaatataagtgtcatcat 252  Q
    ||||||||||||||||||||| || ||||||||||||    
T  19923490 ttcattcaaacaaacagtttagtaaaagtgtcatcat 19923526  T

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Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 4240009 - 4240091
Alignment:
Q  11 cataggccagattatataattatataaagattaaattgatttcgtattaattcatcaaatctatatataattcaaacatggat 93  Q
    ||||||||| ||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| ||||||||||    
T  4240009 cataggccaaattatatcattatataaagatcaaattaatttcatattaattcatcaaatctatatataattaaaacatggat 4240091  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 4240558 - 4240634
Alignment:
Q  283 cttgtagtaaggaattaggacctggtggattcagnnnnnnnggagtcatggatagatggatggatcgatgagttataataa 363  Q
    ||||||||||||||||||||||||||||||||||       |||||||||    |||||||||||||||||||||||||||    
T  4240558 cttgtagtaaggaattaggacctggtggattcagagaaacaggagtcatg----gatggatggatcgatgagttataataa 4240634  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 4240216 - 4240282
Alignment:
Q  116 ttgtcttatttcaaaacaacacaattaccacggtggatatatagatcatatattaattagaacatctat 184  Q
    ||||||| |||||||| ||||||||||| | ||||||||||||||||||||||  ||||||||||||||    
T  4240216 ttgtcttgtttcaaaagaacacaattactatggtggatatatagatcatatat--attagaacatctat 4240282  T

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