View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21434_high_15 (Length: 251)
Name: NF21434_high_15
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8706237 - 8705995
Alignment:
| Q |
1 |
atttatttctggcaaagtttcactcacctataaaacaaatataagttctcagcatgtctcatgtagaaaggtttaaatccaaaactttgttctcaaaatt |
100 |
Q |
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| T |
8706237 |
atttatttctggcaaagtttcactcacctataaaacaaatataagttctcagcatgtttcatgtagaaaggcttaaatccaaaactttgttctcaaaatt |
8706138 |
T |
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| Q |
101 |
tctatcatcatttaccaaggatgaactccttacatcaggaattccttcaaaaatttcttgactttcatgatcagaactcatgtgtctacttggctcccct |
200 |
Q |
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| T |
8706137 |
tctat-atcatttatcaaggatgaactccttacatcaggaattccttcaaaaatttcttgactttcatggtcagaactcatgtgtctacttggctcccct |
8706039 |
T |
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| Q |
201 |
tcatcatgtatatctgcttcagcttccttttcagcttttttctc |
244 |
Q |
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| T |
8706038 |
tcatcatgtatatctgcttcagcttccttttcagcttttttctc |
8705995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 8691511 - 8691370
Alignment:
| Q |
65 |
agaaaggtttaaatccaaaactttgttctcaaaatttctatcatcatttaccaaggatgaactccttacatcaggaattccttcaaaaatttcttgactt |
164 |
Q |
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| T |
8691511 |
agaaaggtttaaaattaaaactttgttttcaaaatttctattgtcatttatcaagaatgaaatccttacatcaggaattccttcaactgtttcttgattt |
8691412 |
T |
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| Q |
165 |
tcatgatcagaactcatgtgtctacttggctccccttcatca |
206 |
Q |
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| T |
8691411 |
tcgtgatcggaactcatgtgtcgactaggctccccttcatca |
8691370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 8744817 - 8744652
Alignment:
| Q |
31 |
taaaacaaatataagttctcagcatgtctcatgtagaaaggtttaaatccaaaactttgttctcaaaatttctatcatcatttaccaaggatgaactcct |
130 |
Q |
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| T |
8744817 |
taaaacaagtataagttcttagcatgtttcatgtgaaattgtgtaaagccaaaactttgttttcaaaatttctat----------caaggatgaacttct |
8744728 |
T |
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| Q |
131 |
tacatcaggaattccttcaaaaatttcttgactttcatgatcagaactcatgtgtctacttggctccccttcatca |
206 |
Q |
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| T |
8744727 |
tacatttgaaattccttctaatgtttcttgattttcgtagtgagagctcatgtgtctacttgactcccctacatca |
8744652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 8724978 - 8724900
Alignment:
| Q |
29 |
tataaaacaaatataagttctcagcatgtctcatgtagaaaggtttaaatccaaaactttgttctcaaaatttctatca |
107 |
Q |
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|||||||||| |||||||||||||||||| |||||| ||||||| |||| |||| |||| | | | ||||||||||||| |
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| T |
8724978 |
tataaaacaagtataagttctcagcatgtttcatgtggaaaggtgtaaaaccaagacttggctttgaaaatttctatca |
8724900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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