View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21434_high_18 (Length: 244)

Name: NF21434_high_18
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21434_high_18
NF21434_high_18
[»] chr1 (36 HSPs)
chr1 (14-224)||(11905446-11905656)
chr1 (14-212)||(11891835-11892033)
chr1 (22-212)||(11882657-11882847)
chr1 (14-212)||(52818488-52818686)
chr1 (14-170)||(11882409-11882565)
chr1 (14-170)||(11891643-11891799)
chr1 (14-140)||(11882361-11882487)
chr1 (14-140)||(11882601-11882727)
chr1 (14-140)||(11891595-11891721)
chr1 (14-212)||(11905254-11905452)
chr1 (14-128)||(11882457-11882571)
chr1 (14-128)||(11891691-11891805)
chr1 (16-125)||(11882315-11882424)
chr1 (16-125)||(11891549-11891658)
chr1 (16-137)||(11905208-11905329)
chr1 (16-146)||(52818842-52818972)
chr1 (14-137)||(52818755-52818878)
chr1 (14-171)||(52818769-52818926)
chr1 (14-122)||(11902552-11902660)
chr1 (43-140)||(11882582-11882679)
chr1 (43-140)||(11891816-11891913)
chr1 (43-140)||(11905427-11905524)
chr1 (46-122)||(11902680-11902756)
chr1 (55-137)||(11882306-11882388)
chr1 (55-137)||(11891540-11891622)
chr1 (52-212)||(11880042-11880202)
chr1 (46-122)||(11880180-11880256)
chr1 (55-131)||(52819097-52819173)
chr1 (43-122)||(52820933-52821012)
chr1 (58-107)||(11879595-11879644)
chr1 (49-122)||(11879634-11879707)
chr1 (46-134)||(11879796-11879884)
chr1 (46-122)||(11880084-11880160)
chr1 (88-212)||(11880174-11880298)
chr1 (49-113)||(52821086-52821150)
chr1 (49-101)||(52821338-52821390)
[»] scaffold1918 (1 HSPs)
scaffold1918 (19-137)||(19-137)
[»] chr4 (1 HSPs)
chr4 (97-141)||(24482211-24482255)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 11905446 - 11905656
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11905446 caccaccatcaccatcaccaccccctccctactattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctcccccacc 11905545  T
Q  114 tccatctccatctccaccacctccttatcactatcaaagtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccaccg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11905546 tccatctccatctccaccacctccttatcactatcaaagtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccaccg 11905645  T
Q  214 tctccagctcc 224  Q
    |||||| ||||    
T  11905646 tctccatctcc 11905656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 11891835 - 11892033
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||    
T  11891835 caccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacc 11891934  T
Q  114 tccatctccatctccaccacctccttatcactatcaaagtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccacc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11891935 tccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctcccaactactacaaatcccctccaccacc 11892033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 11882657 - 11882847
Alignment:
Q  22 tcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctc 121  Q
    ||||||||||| || ||||  || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11882657 tcaccatcaccgccacctccttactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctc 11882756  T
Q  122 catctccaccacctccttatcactatcaaagtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccacc 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11882757 catctccaccacctccttaccactatcaaagtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccacc 11882847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 52818686 - 52818488
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    |||||||||| || || ||||| |||| ||| || |||||||||||||||||||| || || ||||| |||||||||||||||||||| || ||  ||||    
T  52818686 caccaccatcgccttctccaccacctccctactactacaaatcacctccaccaccatccccgtcacctccacctccttactattacaagtcacctccacc 52818587  T
Q  114 tccatctccatctccaccacctccttatcactatcaaagtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccacc 212  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||    
T  52818586 tccatctccatctccaccacctccttattactatcaaagtcctcctccaccatctcccactcctcatactccctaccactacaaatcccctccaccacc 52818488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 11882409 - 11882565
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    ||||||||||||||||||| |||||||  || ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||  ||||    
T  11882409 caccaccatcaccatcacctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactattacaaatcacctccacc 11882508  T
Q  114 tccatctccatctccaccacctccttatcactatcaaagtcctcctccaccatctcc 170  Q
     ||||| ||||| ||||||||||| ||  ||||  ||||||| ||||||||||||||    
T  11882509 accatccccatcaccaccacctccatactactacaaaagtccccctccaccatctcc 11882565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 11891643 - 11891799
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    ||||||||||||||||||| |||||||  || ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||  ||||    
T  11891643 caccaccatcaccatcacctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactattacaaatcacctccacc 11891742  T
Q  114 tccatctccatctccaccacctccttatcactatcaaagtcctcctccaccatctcc 170  Q
     ||||| ||||| ||||||||||| ||  ||||  ||||||| ||||||||||||||    
T  11891743 accatccccatcaccaccacctccatactactacaaaagtccccctccaccatctcc 11891799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 11882361 - 11882487
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||  ||||    
T  11882361 caccaccatcaccatcaccaccacctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattacaaatctcctccacc 11882460  T
Q  114 tccatctccatctccaccacctcctta 140  Q
     ||||| ||||| ||||||||||||||    
T  11882461 accatcaccatcaccaccacctcctta 11882487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 11882601 - 11882727
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||  ||||    
T  11882601 caccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatcacctccacc 11882700  T
Q  114 tccatctccatctccaccacctcctta 140  Q
    ||| || ||||| || |||||||||||    
T  11882701 tccctcaccatcaccgccacctcctta 11882727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 11891595 - 11891721
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||  ||||    
T  11891595 caccaccatcaccatcaccaccacctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattacaaatctcctccacc 11891694  T
Q  114 tccatctccatctccaccacctcctta 140  Q
     ||||| ||||| ||||||||||||||    
T  11891695 accatcaccatcaccaccacctcctta 11891721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 11905254 - 11905452
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    |||||||||| ||||||||||  | || ||| ||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||| ||  ||||    
T  11905254 caccaccatccccatcaccacaacatccctactattacaaatcacctccaccaccatcgccatcaccaccacctccctactattacaaatcacctccacc 11905353  T
Q  114 tccatctccatctccaccacctccttatcactatcaaagtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccacc 212  Q
     ||||| ||||| || |||||||| ||  ||||  |||| || |||||||| ||||||  | ||| ||| || || ||||||||||| || ||||||||    
T  11905354 accatcaccatcgcctccacctccatactactacaaaagcccccctccaccttctccctctcctcctcccccatattactacaaatctccaccaccacc 11905452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 11882457 - 11882571
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    |||||||||||||||||||||| ||||  || ||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||  |||| | ||    
T  11882457 caccaccatcaccatcaccaccacctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatactactacaaaagtccccctcc 11882556  T
Q  114 tccatctccatctcc 128  Q
     ||||||||||||||    
T  11882557 accatctccatctcc 11882571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 11891691 - 11891805
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    |||||||||||||||||||||| ||||  || ||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||  |||| | ||    
T  11891691 caccaccatcaccatcaccaccacctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatactactacaaaagtccccctcc 11891790  T
Q  114 tccatctccatctcc 128  Q
     ||||||||||||||    
T  11891791 accatctccatctcc 11891805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 11882315 - 11882424
Alignment:
Q  16 ccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctc 115  Q
    |||||||||||||| || |||||||  || ||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| ||  |||| |    
T  11882315 ccaccatcaccatcccctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattacaaatcacctccaccac 11882414  T
Q  116 catctccatc 125  Q
    |||| |||||    
T  11882415 catcaccatc 11882424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 11891549 - 11891658
Alignment:
Q  16 ccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctc 115  Q
    |||||||||||||| || |||||||  || ||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| ||  |||| |    
T  11891549 ccaccatcaccatcccctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattacaaatcacctccaccac 11891648  T
Q  116 catctccatc 125  Q
    |||| |||||    
T  11891649 catcaccatc 11891658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 11905208 - 11905329
Alignment:
Q  16 ccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctc 115  Q
    |||||||||||||| || |||||||  |||||||||||||| ||||||||||| || |||||||| | || ||| |||||||||||||| ||  |||| |    
T  11905208 ccaccatcaccatcccctccccctccatattattacaaatctcctccaccaccatccccatcaccacaacatccctactattacaaatcacctccaccac 11905307  T
Q  116 catctccatctccaccacctcc 137  Q
    |||| ||||| |||||||||||    
T  11905308 catcgccatcaccaccacctcc 11905329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 52818972 - 52818842
Alignment:
Q  16 ccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctc 115  Q
    |||||||||||||| || |||||||  || ||||| ||||| ||||||||||| |||||||| || || || || ||||||||| |||| ||  |||| |    
T  52818972 ccaccatcaccatcccctccccctccatactattataaatctcctccaccaccctcaccatccccacctccaccgtactattaccaatcccctccaccac 52818873  T
Q  116 catctccatctccaccacctccttatcacta 146  Q
    |||| ||||||||||||||||||||| ||||    
T  52818872 catcaccatctccaccacctccttattacta 52818842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 52818878 - 52818755
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    |||||||||||||||| ||||| ||||  ||||| ||||||||||||||||||||  | |||||||| |||||||| ||||| ||||||  |||| | ||    
T  52818878 caccaccatcaccatctccaccacctccttattactacaaatcacctccaccaccaaccccatcacctccacctccatactactacaaaagtccccctcc 52818779  T
Q  114 tccatctccatctccaccacctcc 137  Q
     || ||||| ||||| ||||||||    
T  52818778 accctctccctctcctccacctcc 52818755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 52818926 - 52818769
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    ||||||| |||||||| ||||| || |  || |||||| |||| ||||||||||| |||||||| || ||||||||||| || |||||||| ||  ||||    
T  52818926 caccaccctcaccatccccacctccaccgtactattaccaatcccctccaccaccatcaccatctccaccacctccttattactacaaatcacctccacc 52818827  T
Q  114 tccatctccatctccaccacctccttatcactatcaaagtcctcctccaccatctccc 171  Q
     ||| | ||||| || |||||||| ||  ||||  ||||||| |||||||| ||||||    
T  52818826 accaaccccatcacctccacctccatactactacaaaagtccccctccaccctctccc 52818769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 11902552 - 11902660
Alignment:
Q  14 caccaccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    ||||||| ||||| || |||||||| |  || |||||||| || ||||||||||| |||||||| || ||||| || |||||||||||||||||  | ||    
T  11902552 caccaccctcaccctctccacccccaccttactattacaagtctcctccaccaccttcaccatctcctccaccaccatactattacaaatctcctcctcc 11902651  T
Q  114 tccatctcc 122  Q
    |||||||||    
T  11902652 tccatctcc 11902660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 11882582 - 11882679
Alignment:
Q  43 tattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctccatctccaccacctcctta 140  Q
    ||||| |||||||| || |||||||| |||||||| || || ||||| |||||||||||||| ||  ||||||| || ||||| || |||||||||||    
T  11882582 tattactacaaatctccaccaccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctcctta 11882679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 11891816 - 11891913
Alignment:
Q  43 tattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctccatctccaccacctcctta 140  Q
    ||||| |||||||| || |||||||| |||||||| || || ||||| |||||||||||||| ||  ||||||| || ||||| || |||||||||||    
T  11891816 tattactacaaatctccaccaccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctcctta 11891913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 11905427 - 11905524
Alignment:
Q  43 tattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctccatctccaccacctcctta 140  Q
    ||||| |||||||| || |||||||| ||||||||||| || ||||| |||||||||||||| ||  |||| || || ||||| || |||||||||||    
T  11905427 tattactacaaatctccaccaccaccatcaccatcaccaccccctccctactattacaaatcacctccaccaccgtcaccatcaccgccacctcctta 11905524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 11902680 - 11902756
Alignment:
Q  46 tattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctcc 122  Q
    ||||||||||| || |||||||| |||||||| || ||||| || |||||||||||||||||  | |||||||||||    
T  11902680 tattacaaatctcccccaccaccttcaccatctcctccaccaccatactattacaaatctcctcctcctccatctcc 11902756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 11882306 - 11882388
Alignment:
Q  55 tcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctccatctccaccacctcc 137  Q
    ||||| || ||||| |||||||| || || ||||| |||||||||||||||||  |||| ||||| ||||| |||||||||||    
T  11882306 tcaccacccccaccatcaccatcccctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctcc 11882388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 11891540 - 11891622
Alignment:
Q  55 tcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctccatctccaccacctcc 137  Q
    ||||| || ||||| |||||||| || || ||||| |||||||||||||||||  |||| ||||| ||||| |||||||||||    
T  11891540 tcaccacccccaccatcaccatcccctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctcc 11891622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 212
Target Start/End: Original strand, 11880042 - 11880202
Alignment:
Q  52 aaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctccatctccaccacctccttatcactatcaaa 151  Q
    ||||| || |||||||||||||| || || ||||| |||||||||||||| |||||  | || || || |||||||| ||||| || ||  ||||  ||     
T  11880042 aaatctcccccaccaccgtcaccctctccaccaccaccttactattacaagtctcctcccccaccttcaccatctcctccaccaccatactactacaaat 11880141  T
Q  152 gtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccacc 212  Q
     ||||||||| |||||||| ||| | ||| | || ||||| |||||||| || ||||||||    
T  11880142 ctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccaccacc 11880202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 11880180 - 11880256
Alignment:
Q  46 tattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctcc 122  Q
    ||||||||||| || |||||||| |||||||| || ||||| || ||||| |||||||||||  | |||||||||||    
T  11880180 tattacaaatctcccccaccaccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcc 11880256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 52819173 - 52819097
Alignment:
Q  55 tcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctccatctccacc 131  Q
    ||||| || ||||| || |||||||| || ||||| |||||||||||||||||| |||| ||||| ||||| |||||    
T  52819173 tcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacc 52819097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 52821012 - 52820933
Alignment:
Q  43 tattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctcc 122  Q
    |||||||| ||||| ||||||||||| |||||||| || ||||| || || |||||||| |||||  | |||||||||||    
T  52821012 tattattataaatctcctccaccaccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctcc 52820933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 11879595 - 11879644
Alignment:
Q  58 cctccaccaccgtcaccatcaccgccacctccttactattacaaatctcc 107  Q
    ||||||||||| || || ||||| |||||||||||||| |||||||||||    
T  11879595 cctccaccaccttctccttcacctccacctccttactactacaaatctcc 11879644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 11879634 - 11879707
Alignment:
Q  49 tacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctcc 122  Q
    |||||||| ||||||||||| ||||| || || ||||| || ||||||||||| |||||  |||| ||||||||    
T  11879634 tacaaatctcctccaccaccctcaccttccccaccaccaccatactattacaagtctcctccaccaccatctcc 11879707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 11879796 - 11879884
Alignment:
Q  46 tattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctccatctccaccacc 134  Q
    |||||||| || || |||||||| |||||||| || ||||| || ||||| |||||||||||| |||| || || || ||||| |||||    
T  11879796 tattacaagtccccaccaccaccttcaccatctcctccaccaccatactactacaaatctcccccacccccttcaccgtctcctccacc 11879884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 11880084 - 11880160
Alignment:
Q  46 tattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccatctcc 122  Q
    |||||||| || ||||| ||||| |||||||| || ||||| || ||||| |||||||||||  | |||||||||||    
T  11880084 tattacaagtctcctcccccaccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcc 11880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 11880174 - 11880298
Alignment:
Q  88 ccttactattacaaatctccctcacctccatctccatctccaccacctccttatcactatcaaagtcctcctccaccatctcccatttctcatcctccct 187  Q
    ||||||||||||||||||||| |||| || || |||||||| ||||| || ||  ||||  ||  ||||||||| |||||||| ||| | | | | || |    
T  11880174 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcctattccccgtacacctt 11880273  T
Q  188 actactacaaatcccctccaccacc 212  Q
    |||| |||||||| || ||||||||    
T  11880274 actattacaaatctcccccaccacc 11880298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 52821150 - 52821086
Alignment:
Q  49 tacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacc 113  Q
    ||||| || ||||||||||| || || ||||| |||||||||||||| ||||| |||||| ||||    
T  52821150 tacaagtctcctccaccaccctctccctcacctccacctccttactactacaagtctcccccacc 52821086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 52821390 - 52821338
Alignment:
Q  49 tacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaa 101  Q
    ||||| |||||||||||||| || || ||||| |||||||||||||| |||||    
T  52821390 tacaagtcacctccaccaccctctccctcacctccacctccttactactacaa 52821338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1918 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 137 - 19
Alignment:
Q  19 ccatcaccatcaccaccccctctctattattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctccctcacctccat 118  Q
    ||||| |||||||| || ||||  |||||||||||||| || ||||| || ||||  || || ||||| ||||||||||||||||||||  |||| ||||    
T  137 ccatccccatcacctccacctccttattattacaaatcccccccacccccctcacattcccctccaccaccttactattacaaatctccaccaccaccat 38  T
Q  119 ctccatctccaccacctcc 137  Q
    |||| || || ||||||||    
T  37 ctccctcacctccacctcc 19  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 24482255 - 24482211
Alignment:
Q  97 tacaaatctccctcacctccatctccatctccaccacctccttat 141  Q
    |||||||||||  |||| ||||||||||| |||||||||||||||    
T  24482255 tacaaatctccaccaccaccatctccatcaccaccacctccttat 24482211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University