View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21434_high_19 (Length: 241)
Name: NF21434_high_19
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_high_19 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 8706473 - 8706253
Alignment:
| Q |
21 |
tcggactggacatgaccgctgtccaaatccccgtcaataatcattgaactgatgaacttatcttcctcttcaatagttttaaatggactctgaacaatga |
120 |
Q |
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| T |
8706473 |
tcggactggacatgaccgctgtccaaatccccgtcaataatcattgaactgatgaacttatcttcctcttcaatagttttaaatggactctgaacaatga |
8706374 |
T |
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| Q |
121 |
tgttgtcatttctaaaataggcatcgtgaagtcgtgagtttgggattgatacttcctgctcattttcagagattgaagactgttgtggtgagaaaggaaa |
220 |
Q |
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| T |
8706373 |
tgttgtcatttctaaaataggcatcgtgaagtcgtgagtttgggattgatacttcctgctcattttcagagattgaagactgttgtggtgagaaaggaaa |
8706274 |
T |
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| Q |
221 |
taaattttcttcctgtgcctg |
241 |
Q |
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| T |
8706273 |
gaaattttcttcctgtgcctg |
8706253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 8745066 - 8744915
Alignment:
| Q |
54 |
tcaataatcattgaactgatgaacttatcttcctcttcaatagttttaaatggactctgaacaatgatgttgtcatttctaaaataggcatcgtgaagtc |
153 |
Q |
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| T |
8745066 |
tcaacaatcattgaattaatgaagttattttcctcttcattggtttcaaagggactctgaataaccatgtcttcatttctaaaataatctccttgaaatt |
8744967 |
T |
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| Q |
154 |
gtgagtttgggattgatacttcctgctcattttcagagattgaagactgttg |
205 |
Q |
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| T |
8744966 |
gtgagtttgagaaatatacttcccgctcattttcatagattgaagattgttg |
8744915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 8691690 - 8691629
Alignment:
| Q |
168 |
gatacttcctgctcattttcagagattgaagactgttgtggtgagaaaggaaataaattttc |
229 |
Q |
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| T |
8691690 |
gatacttcgttctcattttcagagattgaaggctggtatgttgagaaaggaaagtaattttc |
8691629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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