View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21434_high_4 (Length: 467)
Name: NF21434_high_4
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 69 - 317
Target Start/End: Complemental strand, 3895519 - 3895271
Alignment:
| Q |
69 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895519 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
3895420 |
T |
|
| Q |
169 |
gcctctgtcgccgacccagcaacctcccccgtcttctctgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895419 |
gcctctgtcgccgacccagcaacctcccccgtcttctccgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
3895320 |
T |
|
| Q |
269 |
tttcctttgcatcataagcataatctctagccttctctccagcattctc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
3895319 |
tttcctttgcatcataagcataatctctagctttctccccagcactctc |
3895271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 259 - 411
Target Start/End: Complemental strand, 3895197 - 3895045
Alignment:
| Q |
259 |
tccttggttctttcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttat |
358 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895197 |
tcctttgttctctcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttat |
3895098 |
T |
|
| Q |
359 |
cccccacagaacctgctgcttcattggttctgtcttttacctcataagcatag |
411 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895097 |
cccacacagaacctgctgcttcattggttctgtcttttacctcataagcatag |
3895045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 257 - 374
Target Start/End: Complemental strand, 3895079 - 3894962
Alignment:
| Q |
257 |
cttccttggttctttcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggcttt |
356 |
Q |
| |
|
|||| |||||||| || ||| | ||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || | |||||||||| ||||||| |
|
|
| T |
3895079 |
cttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgccttctctgcagctctgtctgttccttctttggcttt |
3894980 |
T |
|
| Q |
357 |
atcccccacagaacctgc |
374 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
3894979 |
ctcccacattgaacctgc |
3894962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 3895574 - 3895538
Alignment:
| Q |
11 |
catcatctactactacaccagaaccaccactaccacg |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895574 |
catcatctactactacaccagaaccaccactaccacg |
3895538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University