View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21434_high_6 (Length: 345)
Name: NF21434_high_6
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 7623351 - 7623665
Alignment:
| Q |
15 |
aaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttctttctccacttcccaattcaacttct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623351 |
aaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttctttctccacttcccaattcaacttct |
7623450 |
T |
|
| Q |
115 |
tcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtgaaagatatcaatatttcactcaagtttacacctttttcat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623451 |
tcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtgaaagatatcaatatttcactcaagtttacacctttttcat |
7623550 |
T |
|
| Q |
215 |
caccatcattctgtgacagcttttgaatcaattcagccacttcattttctctaataggcctaaaagaatgtagacttttagggctaaaaaggtgaagagc |
314 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7623551 |
caccatcatactgtgacagcttttgaatcaattcagccacttcattttctctaataggcctaaaagaatgtagacttttagggctaaagaggtgaagagc |
7623650 |
T |
|
| Q |
315 |
acaaagctttttcat |
329 |
Q |
| |
|
||||||||||||||| |
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| T |
7623651 |
acaaagctttttcat |
7623665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 7629660 - 7629977
Alignment:
| Q |
15 |
aaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttctttctccacttcccaattcaacttct |
114 |
Q |
| |
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||||| ||| ||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |
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| T |
7629660 |
aaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcctttgtccacttcccaattcaactcct |
7629759 |
T |
|
| Q |
115 |
tcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtgaaagatatcaatatttcactcaagtttacacctttttcat |
214 |
Q |
| |
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|| ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||||||| |
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| T |
7629760 |
tcttcataatcacaaacatatgttttcccaaaagctatcttacatataattgtatttgtgagagacatcaatatttcactcaagttcgcacctttttcat |
7629859 |
T |
|
| Q |
215 |
caccatcattctgtgacagcttttgaatcaattcagccacttcattttctctaataggcctaaaagaatgtagacttttagggctaaaaaggtgaagagc |
314 |
Q |
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||||| ||| || |||| |||||||||||||| ||||||||||||||||||| |||||||||||||| || || || |||||| |||||| || | |
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| T |
7629860 |
caccaccatattgcgacaacttttgaatcaattgggccacttcattttctctaacgggcctaaaagaatgggcacgttgagagctaaagaggtgatgaac |
7629959 |
T |
|
| Q |
315 |
acaaagctttttcatctc |
332 |
Q |
| |
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|||||| ||| ||||||| |
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| T |
7629960 |
acaaagttttctcatctc |
7629977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 7636443 - 7636712
Alignment:
| Q |
15 |
aaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttctttctccacttcccaattcaacttct |
114 |
Q |
| |
|
||||| ||| ||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
7636443 |
aaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcttttgtccacttcccaattcaacttct |
7636542 |
T |
|
| Q |
115 |
tcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtgaaagatatcaatatttcactcaagtttacacctttttcat |
214 |
Q |
| |
|
|| ||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||||||| |
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|
| T |
7636543 |
tcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgagagacatcaatatttcactcaagttcgcacctttttcat |
7636642 |
T |
|
| Q |
215 |
caccatcattctgtgacagcttttgaatcaattcagccacttcattttctctaataggcctaaaagaatg |
284 |
Q |
| |
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||||| ||| || |||| |||||||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
7636643 |
caccaccatattgcgacaacttttgaatcaattgggccacttcattttctctaacgggcctaaaagaatg |
7636712 |
T |
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