View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21434_high_7 (Length: 341)
Name: NF21434_high_7
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 328
Target Start/End: Complemental strand, 3129049 - 3128730
Alignment:
| Q |
4 |
cttcagaaatgcaagaaccaagcttagggatgatgcagggtggtggtggtgtttacggcggagatggtggcggtgagaacagacaactgaaggcggagat |
103 |
Q |
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| T |
3129049 |
cttcagaaatgcaagaaccaagcttagggatgatgcagggtagtggtggtggttacggcggagatggtggcggtgagaacagacaactgaaggcggagat |
3128950 |
T |
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| Q |
104 |
agcaacacatcctttgtatgaacagcttctgtctgcacatgtagcatgtcttcgagttgctactcctatagatcagttaccattgattgatgctcagtta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3128949 |
agcaacacatcctttgtatgaacagcttctgtctgcacatgtagcatgtcttcgagttgctactcctatagatcagttaccattgattgatgctcagtta |
3128850 |
T |
|
| Q |
204 |
tctcaatctcatcatcttctacgatcttatatatctcaacaaactcattctctttcgcctcatgatcgtcaacaactcgacaacttcctcgtatgtctgt |
303 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3128849 |
tctcaatctcatcatcttctacgatcttatatctctcaacaaactcattctctttcgcctcatgatcgtcaacaactcgacaacttcctcgtatgt---- |
3128754 |
T |
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| Q |
304 |
actgtactatcatctttctatattc |
328 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
3128753 |
-ctttactatcatctttctatattc |
3128730 |
T |
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