View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21434_high_9 (Length: 305)
Name: NF21434_high_9
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 47712463 - 47712741
Alignment:
| Q |
19 |
ctccatcccccaacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacct |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712463 |
ctccatcccccaacgaccgaataatatcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacct |
47712562 |
T |
|
| Q |
119 |
ctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712563 |
ctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaac |
47712662 |
T |
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| Q |
219 |
acctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagtataat |
297 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47712663 |
acctcaggcaactccaaaaccttcctcaatggcaccaacacatccttcctcaaacgatcacgaaccctataagcataat |
47712741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 39 - 297
Target Start/End: Original strand, 19795584 - 19795842
Alignment:
| Q |
39 |
ataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaaaa |
138 |
Q |
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||||| || ||||||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
19795584 |
ataatctcgtgaggaagcaaagcaccagcagcaatagtagtcttccctgccttcacatcctccaagtacttctcaaacctctccttatcatgcttcaaaa |
19795683 |
T |
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| Q |
139 |
acttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaac |
238 |
Q |
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||||||| |||||||||| |||||||||||| |||||||| ||||| |||||||| |||| ||||||| |||||||||||||||||||||||||| || |
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| T |
19795684 |
acttctccttataaaacttcatcgccacagaagcaaccctattgtatggaatcaaaccccattgattagcaccaataaacacctcaggcaactccaacac |
19795783 |
T |
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| Q |
239 |
cttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagtataat |
297 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |
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| T |
19795784 |
cttcctcaacggcaccaacacatctttcctcaaccgatcacgaaccctataagcataat |
19795842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 19786023 - 19785745
Alignment:
| Q |
19 |
ctccatcccccaacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacct |
118 |
Q |
| |
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||||||||||||| ||| ||||| | ||||||||||||||||||||||| || |||||||| || | |||||||||| ||| |||||||||||||| |
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| T |
19786023 |
ctccatcccccaaagactctataatctggtgaggaagcaaagcaccagcagcaatagtagtctttcctgccttcacatccttcaagtacttctcaaacct |
19785924 |
T |
|
| Q |
119 |
ctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaac |
218 |
Q |
| |
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|| |||||||||||||||||||| || |||||||||| |||||||||||| ||||| || |||||||||||||| |||| ||||||| ||||||||| |
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| T |
19785923 |
ctccttatcatgcttcaaaaacttttccttataaaacttcatcgccacagaagcaactctattgtaaggaatcaaaccccattgattagcaccaataaac |
19785824 |
T |
|
| Q |
219 |
acctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagtataat |
297 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
19785823 |
acctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctataagcataat |
19785745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 47 - 297
Target Start/End: Original strand, 15834899 - 15835149
Alignment:
| Q |
47 |
atgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctct |
146 |
Q |
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|||||||||||||||||||||||| || ||||||||||| | |||||||||| ||| |||||||||||||||| | ||||||||||||||||||||| |
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| T |
15834899 |
atgaggaagcaaagcaccagcagccatagtagtcttccctgccttcacatcctgcaagtacttctcaaacctctcctcatcatgcttcaaaaacttctcc |
15834998 |
T |
|
| Q |
147 |
ttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctca |
246 |
Q |
| |
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|||||||||||||| |||||||| |||||||| || ||||||||||| |||| |||||||||||||||||||||||||||| | ||| ||||||||| |
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| T |
15834999 |
ttataaaactccatggccacagaagcaaccctattataaggaatcaaaccccattgattagccccaataaacacctcaggcaattgcaacgccttcctca |
15835098 |
T |
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| Q |
247 |
acggcaccaacacatccttcctcaaacgatcacgaaccctataagtataat |
297 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
15835099 |
acggcaccaacacatctttcctcaaacgatcacgaaccctataagcataat |
15835149 |
T |
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