View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21434_low_1 (Length: 798)
Name: NF21434_low_1
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 643; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 1 - 755
Target Start/End: Original strand, 3498539 - 3499293
Alignment:
| Q |
1 |
ataacggtagctggattaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcatcagcagctataatcccacttggcccacatt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3498539 |
ataacggtagctggactaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcatcagcagctataatcccacttggcccacatt |
3498638 |
T |
|
| Q |
101 |
ctattagccctttactagtgcaaaaccatttgggcggtgttgcattttgagtaggaggcctttgggaccaatgaagttgaacctttcctgattgtgatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3498639 |
ctattagccctttactagtgcaaaaccatttgggcggtgttgcattctgagtaggaggcctttgggaccaatgaagttgaacctttcctgattgtgatac |
3498738 |
T |
|
| Q |
201 |
agaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttagacacacaagcatcttacaatttaattagnnnnnnnnnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
3498739 |
agaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgtcaaacacacaagcatcttacaatttaattagaaaaggaaaaac |
3498838 |
T |
|
| Q |
301 |
nnnnnnnncaatcagatattaaagacaaatagtggataacataattctaatttaaagttcagtcataaatgtcacaaccaacatcatggtatgagatttg |
400 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
3498839 |
acaaaaaacaatcagatattaaagacaaagagtggataacataattctaatttaaagttcagtcataaatgtcgcaaccagcatcatgatatgagatttg |
3498938 |
T |
|
| Q |
401 |
aataatatggcatcagccagtcactaagacagttgaataatatggcatcagccttcatctcaaatataaaaagagaaatcatacacgtacatccctatgc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3498939 |
aataatatggcatcagccagtcactaagacagctgaataatatggcatcagccttcatctcaaatataaaaagagaaatcatacacgtacatccctatgc |
3499038 |
T |
|
| Q |
501 |
ttttacagcttaataaatttgccaaaattggaataaaaaccatataaagacagaacagtaaatgcaaaaaggatagacctgaagtttcaggttgttgtga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3499039 |
ttttacagcttaataaatttgccaaaattggaataaaaaccatataaagacagaacagtaaatgcaaaaaggatagacctgaagtttcaggttgttgtga |
3499138 |
T |
|
| Q |
601 |
aataaacttttccacaaatgttgacttcaaatcggtaggagcgcttgcttttgatgaaagccacctatactgtttttcaaaaaagtaactcggattaaaa |
700 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3499139 |
aataaacttttccacaaatgttgacttcgaatcggtcggagcgcttgcttttgatgaaagccacctatactgtatttcaaaaaagtaactcggattaaaa |
3499238 |
T |
|
| Q |
701 |
gacagatcacattgaatgttacaatatctatatatatgtgctcccatgtttatta |
755 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3499239 |
gacagatcacattgaacgttacaatatctatatatatgtgctcccatgtttatta |
3499293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 3510705 - 3510977
Alignment:
| Q |
9 |
agctggattaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcatcagcagctataatcccacttggcccacattctattagc |
108 |
Q |
| |
|
||||||||||| |||| ||||||||||||| | || |||| |||||||||||||||||||| | | |||||| ||||||||||| ||| | | |||| |
|
|
| T |
3510705 |
agctggattaacagctggcacaccggccacaagcaaggtaccgttgtctgtgatgatagcatcaccggttataattccacttggcccgcatgccaatagc |
3510804 |
T |
|
| Q |
109 |
cctttactagtgcaaaaccatttgggcggtgttgcattttgagtaggaggcctttgggaccaatgaagttgaacctttcctgattgtgatacagaacaga |
208 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
3510805 |
cctttactagtgcaaaaccatttgtgcagtgttgcattctgagtaggaggccattgggaccaatgaagttgaaccgatcctgattgtaatacagaacaga |
3510904 |
T |
|
| Q |
209 |
cacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttagacacacaagcatcttacaatttaat |
285 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
3510905 |
cac--agaaaattgggccatctagctgaaatcaaaacaactataattgtcag--acacaagcatcttacaatttaat |
3510977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 563 - 700
Target Start/End: Original strand, 3511671 - 3511808
Alignment:
| Q |
563 |
tgcaaaaaggatagacctgaagtttcaggttgttgtgaaataaacttttccacaaatgttgacttcaaatcggtaggagcgcttgcttttgatgaaagcc |
662 |
Q |
| |
|
||||||||| ||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||||| || ||||||||||| |||||| ||||||| |
|
|
| T |
3511671 |
tgcaaaaagaatagacctgaagtttgagattgttgtgaaataaacttttcctcaaatattgacttcaaattggcaggagcgcttgattttgacgaaagcc |
3511770 |
T |
|
| Q |
663 |
acctatactgtttttcaaaaaagtaactcggattaaaa |
700 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
3511771 |
acctatactgtttttcaaaaatgtaagccggattaaaa |
3511808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 3511057 - 3511103
Alignment:
| Q |
323 |
agacaaatagtggataacataattctaatttaaagttcagtcataaa |
369 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
3511057 |
agacaaaaagaggataacataattctaatttaaaattctgtcataaa |
3511103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 1e-95; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 480 - 737
Target Start/End: Complemental strand, 2354103 - 2353847
Alignment:
| Q |
480 |
catacacgtacatccctatgcttttacagcttaataaatttgccaaaattggaataaaaaccatataaagacagaacagtaaatgcaaaaaggatagacc |
579 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
2354103 |
catacacgtacatccctattcttttacagcttaataaatttgccaaaattggaataaaaaccatataaagtcagaacagtaaatgcaaaaaggataaacc |
2354004 |
T |
|
| Q |
580 |
tgaagtttcaggttgttgtgaaataaacttttccacaaatgttgacttcaaatcggtaggagcgcttgcttttgatgaaagccacctatactgtttttca |
679 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||| |||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
2354003 |
tgaagttagaggttgttgtgaaaaaaacttttccacaaatgttgacttcgaattggttggagcacttgattttgatgaaatcca-ctatactgtttttca |
2353905 |
T |
|
| Q |
680 |
aaaaagtaactcggattaaaagacagatcacattgaatgttacaatatctatatatat |
737 |
Q |
| |
|
||||||||||||| ||||||| | |||||| |||||| ||||||||||||||||||| |
|
|
| T |
2353904 |
aaaaagtaactcgaattaaaaaaaagatcatattgaactttacaatatctatatatat |
2353847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 479 - 743
Target Start/End: Original strand, 2355161 - 2355424
Alignment:
| Q |
479 |
tcatacacgtacatccctatgcttttacagcttaataaatttgccaaaattggaataaaaaccatataaagacagaacagtaaatgcaaaaaggatagac |
578 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || |
|
|
| T |
2355161 |
tcatacacgtacatccctattcttttatagcttaataaatttgccaaaattggaataaaaaccatataaagtcataacagtaaatgcaaaaaggataaac |
2355260 |
T |
|
| Q |
579 |
ctgaagtttcaggttgttgtgaaataaacttttccacaaatgttgacttcaaatcggtaggagcgcttgcttttgatgaaagccacctatactgtttttc |
678 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||||| ||||| ||| |||||||| |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
2355261 |
ctgaagttagaggttgttgtgaaataaactttttcataaatgtttacttcgaattggtaggagtacttgattttgatgaaagcca-ctatactgtttttc |
2355359 |
T |
|
| Q |
679 |
aaaaaagtaactcggattaaaagacagatcacattgaatgttacaatatctatatatatgtgctc |
743 |
Q |
| |
|
|||||| ||||||||||||||| | |||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
2355360 |
aaaaaattaactcggattaaaaaaaagatcatattgaactttacaatatctatatatatgtgctc |
2355424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 54 - 387
Target Start/End: Complemental strand, 2354629 - 2354297
Alignment:
| Q |
54 |
gtctgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaaccatttgggcggtgttgcattttgagta |
153 |
Q |
| |
|
|||||||||||||| | || |||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
2354629 |
gtctgtgatgatagaaccaccagctataataccacttggctcacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttgcattatgagta |
2354530 |
T |
|
| Q |
154 |
ggaggcctttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataa |
253 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2354529 |
agaggcctttggaaccaatgaagttgaaccgatcctgattgtaatacagaacagacacagagaaaattgggccatctagctgaaatcaaaacaattataa |
2354430 |
T |
|
| Q |
254 |
gtgttagacacacaagcatcttacaatttaattagnnnnnnnnnnnnnnnnnnnncaatcagatattaaagacaaatagtggataacataattctaattt |
353 |
Q |
| |
|
|| ||| |||||||||||||||||||||||| |||| |||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
2354429 |
gtcacgcacatacaagcatcttacaatttaattag-aaagggaaaacacaaaaagcaattagatattaaagacaaagactagataacataattctaattt |
2354331 |
T |
|
| Q |
354 |
aaagttcagtcataaatgtcacaaccaacatcat |
387 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||| |
|
|
| T |
2354330 |
aaagttcagtcataaatgtcgcagccagcatcat |
2354297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 57 - 387
Target Start/End: Original strand, 2354640 - 2354969
Alignment:
| Q |
57 |
tgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaaccatttgggcggtgttgcattttgagtagga |
156 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
2354640 |
tgtgatgatagcatctccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggccgtgttgcattctgagtagga |
2354739 |
T |
|
| Q |
157 |
ggcctttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtg |
256 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||| | || |||||||||||| || |||||||| |
|
|
| T |
2354740 |
ggcctttcagaccaatgaagttgaaccgatcctgattgtaatacagaacagacacaaagaaaattgggccttttatctgaaatcaaaataattataagtg |
2354839 |
T |
|
| Q |
257 |
ttagacacacaagcatcttacaatttaattagnnnnnnnnnnnnnnnnnnnncaatcagatattaaagacaaatagtggataacataattctaatttaaa |
356 |
Q |
| |
|
| ||||||||||||||||||| | ||||||| || ||||||| |||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
2354840 |
tcagacacacaagcatcttactaaataattag-aaagggaaaacacaagaagcagtcagatactaaagacaaagactggataacatatttctaatttaaa |
2354938 |
T |
|
| Q |
357 |
gttcagtcataaatgtcacaaccaacatcat |
387 |
Q |
| |
|
||||||||||||||||| | |||| |||||| |
|
|
| T |
2354939 |
gttcagtcataaatgtcgcgaccatcatcat |
2354969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 408 - 482
Target Start/End: Original strand, 2355045 - 2355119
Alignment:
| Q |
408 |
tggcatcagccagtcactaagacagttgaataatatggcatcagccttcatctcaaatataaaaagagaaatcat |
482 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
2355045 |
tggcatcggccaatcactaagacagttgaataatatggcatcaacattcatctcaaatataaaaagagaaatcat |
2355119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 408 - 482
Target Start/End: Complemental strand, 2354222 - 2354145
Alignment:
| Q |
408 |
tggcatcagccagtcactaagacagttgaataata---tggcatcagccttcatctcaaatataaaaagagaaatcat |
482 |
Q |
| |
|
|||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2354222 |
tggcatcagccaataactaagaaagctgaataataatatggcatcagccttcatctcaaatataaaaagagaaatcat |
2354145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 576 - 677
Target Start/End: Original strand, 35569067 - 35569168
Alignment:
| Q |
576 |
gacctgaagtttcaggttgttgtgaaataaacttttccacaaatgttgacttcaaatcggtaggagcgcttgcttttgatgaaagccacctatactgttt |
675 |
Q |
| |
|
|||||||||||| || ||| ||||||| |||||||||| ||||||| |||| |||| | || |||||||| ||| ||||| ||||||||||||| ||| |
|
|
| T |
35569067 |
gacctgaagtttgagattgctgtgaaagaaacttttcctcaaatgtaagcttcgaatctggagtagcgcttgatttggatgatagccacctatactattt |
35569166 |
T |
|
| Q |
676 |
tt |
677 |
Q |
| |
|
|| |
|
|
| T |
35569167 |
tt |
35569168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 3e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 31951596 - 31951329
Alignment:
| Q |
1 |
ataacggtagctggattaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcatcagcagctataatcccacttggcccacatt |
100 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||| || || ||||| ||||||||||||||||||| |||||||||| |||||||||||||| | |
|
|
| T |
31951596 |
ataacagtagctggattaaaagctcgcacaccggccacatgcaatgtaccattgtctgtgatgatagcatctccagctataattccacttggcccacaat |
31951497 |
T |
|
| Q |
101 |
ctattagccctttactagtgcaaaaccatttgggcggtgttgcattttgagtaggaggcctttgggaccaatgaagttgaacctttcctgattgtgatac |
200 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||| ||||| |||| |||||| | |||||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
31951496 |
ctaatagccctttactaatgcaaaaccatttgggttgtgtttcattctgagtatgcggcctttggggacaatgaagttgaaccgatcctgattgtaatac |
31951397 |
T |
|
| Q |
201 |
agaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttagacacacaa |
268 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31951396 |
agaacagacacagagaaaattgggccatctagctgaaatcaaaacaactataagtgtcagacacacaa |
31951329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 31951004 - 31951279
Alignment:
| Q |
1 |
ataacggtagctggattaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcatcagcagctataatcccacttggcccacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || || | ||||| | ||| |||| ||| ||||||||||||||| ||| ||||||||||||||||||||| | |
|
|
| T |
31951004 |
ataacggtagctggattaaaagcttgcgcagcagccacatacaacgtaccgttgtgtgtgatgatagcatctccagatataatcccacttggcccacaat |
31951103 |
T |
|
| Q |
101 |
ctattagccctttactagtgcaaaaccatttgggcggtgttgcattttgagtaggaggcctttgggaccaatgaagttgaacctttcctgattgtgatac |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||| || | || ||||||||||||||||||||||||||||||| |||||||| | |||| |
|
|
| T |
31951104 |
ctaatagccctttactagtgcaaaaccatttgggtcgtgttgccttcttagaaggaggcctttgggaccaatgaagttgaaccaatcctgattataatac |
31951203 |
T |
|
| Q |
201 |
agaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttagacacacaagcatctta |
276 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
31951204 |
agaacagacacaaagaaaattgggtcatctagctgaaatcaaaacaactataagtgtcagacacataagcatctta |
31951279 |
T |
|
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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 263
Target Start/End: Complemental strand, 22925947 - 22925838
Alignment:
| Q |
155 |
gaggcctttgggaccaatgaagttgaacctttcctgattgtga-tacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataa |
253 |
Q |
| |
|
|||||| ||||||||||||||||||||| || |||| || ||||||| ||||||| ||||| | |||||||||| ||||||||||| ||| | || |
|
|
| T |
22925947 |
gaggccattgggaccaatgaagttgaactaaggctaattgagaatacagaagagacacaaagaaaatcgggccatctaactgaaatcaaagcaattgcaa |
22925848 |
T |
|
| Q |
254 |
gtgttagaca |
263 |
Q |
| |
|
|||||||||| |
|
|
| T |
22925847 |
gtgttagaca |
22925838 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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