View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21434_low_11 (Length: 272)
Name: NF21434_low_11
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 6100839 - 6100976
Alignment:
| Q |
24 |
cctttcatggttctggcaaccacattgattcaaagcggtaaaccctcacatctcattacaatacatcttgcaatattgtttacttcatgtgggaagtgtt |
123 |
Q |
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| T |
6100839 |
cctttcatggttatgacaaccacattgattccaagcggtaaaccctcacatcgcattacaatacatcttgcaatattgtttacttcatgtgggaagtgtc |
6100938 |
T |
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| Q |
124 |
ttaggtgttcctttatgttcgagttttgccataaacaa |
161 |
Q |
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| T |
6100939 |
ctgggtgttccttcatgtccgagttttgccataaacaa |
6100976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 6180516 - 6180654
Alignment:
| Q |
24 |
cctttcatggttctggcaaccacattgattcaaagcggtaaaccctcacatctcattacaatacatcttgcaatattgtttacttcatgtgggaagtgtt |
123 |
Q |
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|||||||||||||| || | |||||||||| |||||||||||||| | ||||| || ||||||||| ||||| || | || ||||| | |||| | | |
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| T |
6180516 |
cctttcatggttctagccatcacattgattgcaagcggtaaacccttaaatctctctataatacatctcgcaatcttttctatttcat-ttggaattatc |
6180614 |
T |
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| Q |
124 |
ttaggtgttcctttatgttcgagttttgccataaacaact |
163 |
Q |
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||||||||||| | |||| |||||||| ||||||||||| |
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| T |
6180615 |
ttaggtgttccatcatgtccgagttttagcataaacaact |
6180654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 6247337 - 6247475
Alignment:
| Q |
24 |
cctttcatggttctggcaaccacattgattcaaagcggtaaaccctcacatctcattacaatacatcttgcaatattgtttacttcatgtgggaagtgtt |
123 |
Q |
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|||||||||||||| || | ||||||||| |||||||||||||| | ||||| |||||||||||| ||||| || | || ||||| | |||| | | |
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| T |
6247337 |
cctttcatggttctagccattacattgattgcaagcggtaaacccttaaatctctctacaatacatctcgcaatcttttctatttcat-ttggaaatatc |
6247435 |
T |
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| Q |
124 |
ttaggtgttcctttatgttcgagttttgccataaacaact |
163 |
Q |
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||||||||||| | |||| |||||||| ||||||||||| |
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| T |
6247436 |
ttaggtgttccatcatgtccgagttttagcataaacaact |
6247475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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