View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21434_low_12 (Length: 269)
Name: NF21434_low_12
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 47712750 - 47713013
Alignment:
| Q |
1 |
tccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712750 |
tccacaccttcatactcctccctaggaaaaatcctcttcgcgatactctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatt |
47712849 |
T |
|
| Q |
101 |
tcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagaaaaatgatcagatatacaatcatgaagaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47712850 |
tcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagcaaaatgatcagatatacaatcatgaagaaa |
47712949 |
T |
|
| Q |
201 |
cttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcatctct |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47712950 |
cttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
47713013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 19785736 - 19785489
Alignment:
| Q |
1 |
tccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatt |
100 |
Q |
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|||||||||||||| ||||||| ||| || ||||||||||| ||||||||||||| | |||| | |||||| ||||||||||| ||||| ||||||| |
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| T |
19785736 |
tccacaccttcatattcctcccgagggaagatcctctttgcaatactctcacacagaagagtcgatcgatcaaaggaagagtcaacagaagggcaccatt |
19785637 |
T |
|
| Q |
101 |
tcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagaaaaatgatcagatatacaatcatgaagaaa |
200 |
Q |
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| T |
19785636 |
tagcagcaaggctgattttattgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagcaaaatgatcagagatagaatcatgaagaaa |
19785537 |
T |
|
| Q |
201 |
cttaaaatgagggtcacgattataccgttcaacaagcttcttagccaa |
248 |
Q |
| |
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||||||||||||||| | | || || |||||||||||||||||||| |
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|
| T |
19785536 |
cttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaa |
19785489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 19795851 - 19796114
Alignment:
| Q |
1 |
tccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||| || || ||||||||| | || | || |||||| ||||||||||| ||||| ||||||| |
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| T |
19795851 |
tccacaccttcatactcctccctagggaagatcttcttggcaatggtctcacacagaagagttgaccgatcaaaggaagagtcaacagaagggcaccatt |
19795950 |
T |
|
| Q |
101 |
tcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagaaaaatgatcagatatacaatcatgaagaaa |
200 |
Q |
| |
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| ||||||||||| || || ||| |||||| ||||||||||||| | ||| ||||| |||||||||| ||||||||||| |||||||| |||||||| |
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| T |
19795951 |
tagcagcaagactgattttattgggcgacccggatttcaaaaactcgagatccttcttcaaacaatcagcgaaatgatcagagatacaatcgtgaagaaa |
19796050 |
T |
|
| Q |
201 |
cttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcatctct |
264 |
Q |
| |
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|||||||| || || | |||| || ||||||||||||||||| ||| ||||| || ||||| |
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|
| T |
19796051 |
cttaaaattgggatcggtagtataacgatcaacaagcttcttagctaatgcaatcctcttctct |
19796114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 15835158 - 15835405
Alignment:
| Q |
1 |
tccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatt |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||| || |||||||| || || ||||||||| | || | || |||||| ||||||| || || || ||||||| |
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| T |
15835158 |
tccacaccttcatattcctcccgagggaatatcctcttggcaatggtctcacacagaagagttgaccgatcaaaggaagagtaaagagaggggcaccatt |
15835257 |
T |
|
| Q |
101 |
tcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagaaaaatgatcagatatacaatcatgaagaaa |
200 |
Q |
| |
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| ||||||||||| || ||| ||| |||||| ||||||||||||||| ||| ||||| |||||||||| |||||||| ||| ||||||| |||||| || |
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| T |
15835258 |
tagcagcaagactgatttttctgggtgacccagatttcaaaaactcaagatccttcttcaaacaatcagcaaaatgatgagagatacaattatgaaggaa |
15835357 |
T |
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| Q |
201 |
cttaaaatgagggtcacgattataccgttcaacaagcttcttagccaa |
248 |
Q |
| |
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|||||||| |||||||||||| || || |||||||||||||||||||| |
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|
| T |
15835358 |
cttaaaatcagggtcacgattgtatcgatcaacaagcttcttagccaa |
15835405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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