View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21434_low_17 (Length: 250)
Name: NF21434_low_17
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 10597682 - 10597779
Alignment:
| Q |
21 |
atgacatatttgtgcaatggtttctcagaaaagtttgaatgctcgtcttgttcttaagtttgaatgtgaaaaggatgaagataactgtctcatctgac |
118 |
Q |
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| T |
10597682 |
atgacatatttgtgcaatggtttctcataaaagtttgaatgctcgtcttgttcttaagtttgaatgtgaaaaggatgaagataactgtctcatttgac |
10597779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 10597851 - 10597908
Alignment:
| Q |
189 |
tattttgattgaataaatgtaaacttgtatcaaatcacacatacatttcttatcactcg |
247 |
Q |
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| T |
10597851 |
tattttgattgaataaatgtaa-cttgtatcaaatcacacatacatttcttgtcactcg |
10597908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 23689250 - 23689306
Alignment:
| Q |
5 |
tcaaactagaaatccaatgacatatttgtgcaatggtttctcagaaaagtttgaatg |
61 |
Q |
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| T |
23689250 |
tcaaacttgaaatcctatgatatatttgtgcaatagtttatcagaaaagtttgaatg |
23689306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 114006 - 113946
Alignment:
| Q |
1 |
atgatcaaactagaaatccaatgacatatttgtgcaatggtttctcagaaaagtttgaatg |
61 |
Q |
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| T |
114006 |
atgatcaaattaaaaatcataagacatatttgtgcaatagtttctcaaaaaagtttgaatg |
113946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 24750497 - 24750424
Alignment:
| Q |
14 |
aaatccaatgacatatttgtgcaatggtttctcagaaaagtttgaatgctcgtc-ttgttcttaagtttgaatgt |
87 |
Q |
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| T |
24750497 |
aaatcctatgacatatttgtgcaat-atttctcagaaaactttgaatgttcatcattgttcataagtttgaatgt |
24750424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 56368058 - 56367953
Alignment:
| Q |
7 |
aaactagaaatccaatgacatatttgtgcaatggtttctcagaaaagtttgaatgctcgtcttgttcttaagtttgaatgtgaaaaggatgaagataact |
106 |
Q |
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| T |
56368058 |
aaactagaaatcttatgacatatta-tgcaaatgtttctcagaaaggtttgaatatttatggtgttcataagtttgaatgtaaaaaagatgaagataact |
56367960 |
T |
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| Q |
107 |
gtctcat |
113 |
Q |
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|||||| |
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| T |
56367959 |
atctcat |
56367953 |
T |
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