View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21434_low_21 (Length: 238)

Name: NF21434_low_21
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21434_low_21
NF21434_low_21
[»] chr7 (5 HSPs)
chr7 (1-221)||(10597306-10597526)
chr7 (38-95)||(5677996-5678053)
chr7 (38-95)||(5703048-5703105)
chr7 (131-171)||(13159368-13159408)
chr7 (47-91)||(31000208-31000252)
[»] chr5 (2 HSPs)
chr5 (46-178)||(30808584-30808712)
chr5 (79-221)||(18925678-18925816)
[»] chr4 (2 HSPs)
chr4 (50-120)||(11672890-11672960)
chr4 (134-175)||(42479540-42479581)
[»] chr6 (1 HSPs)
chr6 (21-82)||(2837194-2837255)
[»] chr3 (4 HSPs)
chr3 (131-172)||(9007832-9007873)
chr3 (46-98)||(11364157-11364209)
chr3 (46-98)||(11376888-11376940)
chr3 (50-82)||(26620430-26620462)
[»] chr1 (1 HSPs)
chr1 (131-168)||(34273085-34273122)
[»] chr2 (1 HSPs)
chr2 (30-118)||(22996939-22997027)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10597526 - 10597306
Alignment:
Q  1 caagattcacgccgcataatagggagacaattatcgtcctcctcagctatataagcgtgactcagtgtcacgctcaaggtacactttcattcacccaaat 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10597526 caagattcatgccgcataatagggagacaattatcgtcctcctcagctatataagcgtgactcagcgtcacgctcaaggtacactttcattcacccaaat 10597427  T
Q  101 ttcgcacacaatccacctctctttctcatgtactgacttgagcattggagagttaacgtgcttgcaggcaccattctcatccggtgacgaagcttacact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10597426 ttcgcacacaatccacctctctttctcatgtactgacttgagcattggagtgttaacgtgcttgcaggcaccattctcatccggtgacgaagcttacact 10597327  T
Q  201 caaccacaccggagcaccgtg 221  Q
    |||||||||||||||||||||    
T  10597326 caaccacaccggagcaccgtg 10597306  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 5677996 - 5678053
Alignment:
Q  38 cctcctcagctatataagcgtgactcagtgtcacgctcaaggtacactttcattcacc 95  Q
    ||||| ||||||||||| |||||||||| |||||  |||||||||| | |||||||||    
T  5677996 cctccgcagctatataaccgtgactcagcgtcacagtcaaggtacaatctcattcacc 5678053  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 5703048 - 5703105
Alignment:
Q  38 cctcctcagctatataagcgtgactcagtgtcacgctcaaggtacactttcattcacc 95  Q
    ||||| ||||||||||| |||||||||| |||||  |||||||||| | |||||||||    
T  5703048 cctccgcagctatataaccgtgactcagcgtcacagtcaaggtacaatctcattcacc 5703105  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 13159408 - 13159368
Alignment:
Q  131 tactgacttgagcattggagagttaacgtgcttgcaggcac 171  Q
    |||||| ||||||||||||| |||||||||| |||||||||    
T  13159408 tactgatttgagcattggagtgttaacgtgcctgcaggcac 13159368  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 31000252 - 31000208
Alignment:
Q  47 ctatataagcgtgactcagtgtcacgctcaaggtacactttcatt 91  Q
    ||||||||| ||||||||| ||||| ||||| |||||||||||||    
T  31000252 ctatataagggtgactcagcgtcaccctcaatgtacactttcatt 31000208  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 30808584 - 30808712
Alignment:
Q  46 gctatataagcgtgactcagtgtcacgctcaaggtacactttcattcacccaaatttcgcacacaatccacctctctttctcatgtactgacttgagcat 145  Q
    ||||||||||| ||||||||  ||||||||||| |||||||| |||||||||  |||| ||||||||||||||||  ||| |||  || ||||||||  |    
T  30808584 gctatataagcatgactcagcatcacgctcaagatacacttttattcacccagttttcacacacaatccacctct--ttcacat--accgacttgagtgt 30808679  T
Q  146 tggagagttaacgtgcttgcaggcaccattctc 178  Q
    ||||| | |||||||  ||||||||||||||||    
T  30808680 tggagtgctaacgtgtctgcaggcaccattctc 30808712  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 18925678 - 18925816
Alignment:
Q  79 gtacactttcattcacccaaatttcgcacacaatccacctctctttctcatgtactgacttgagcattggagagttaacgtgcttgcaggcaccattctc 178  Q
    |||||||||||||||  ||| ||||||||||||||||||| |||| ||    ||||||||||||  |||||| |||||||| | |||| |||||||||||    
T  18925678 gtacactttcattcattcaattttcgcacacaatccacctttcttact----tactgacttgagtgttggagtgttaacgttcatgcaagcaccattctc 18925773  T
Q  179 atccggtgacgaagcttacactcaaccacaccggagcaccgtg 221  Q
     ||||   | ||| ||| | |||  ||||||||||||||||||    
T  18925774 ctccgcctatgaaacttgctctcctccacaccggagcaccgtg 18925816  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 11672960 - 11672890
Alignment:
Q  50 tataagcgtgactcagtgtcacgctcaaggtacactttcattcacccaaatttcgcacacaatccacctct 120  Q
    |||||||||||| || | ||| |||||| ||||||||||||| | |||| ||| ||||||| |||||||||    
T  11672960 tataagcgtgacccaatatcatgctcaaagtacactttcatttatccaatttttgcacacattccacctct 11672890  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 42479540 - 42479581
Alignment:
Q  134 tgacttgagcattggagagttaacgtgcttgcaggcaccatt 175  Q
    |||||||||| |||||| ||||||||||||||| ||||||||    
T  42479540 tgacttgagcgttggagtgttaacgtgcttgcatgcaccatt 42479581  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 2837194 - 2837255
Alignment:
Q  21 agggagacaattatcgtcctcctcagctatataagcgtgactcagtgtcacgctcaaggtac 82  Q
    ||||||||||| |||  |||||||  |||||||||||  |||||||||||| ||||||||||    
T  2837194 agggagacaatcatcaacctcctcgcctatataagcgcaactcagtgtcacactcaaggtac 2837255  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 9007832 - 9007873
Alignment:
Q  131 tactgacttgagcattggagagttaacgtgcttgcaggcacc 172  Q
    ||||||||||||| |||||| |||||||||| ||||||||||    
T  9007832 tactgacttgagcgttggagtgttaacgtgcctgcaggcacc 9007873  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 11364209 - 11364157
Alignment:
Q  46 gctatataagcgtgactcagtgtcacgctcaaggtacactttcattcacccaa 98  Q
    ||||||||||||| |||||  ||||| | |||| |||||||||||||||||||    
T  11364209 gctatataagcgttactcaacgtcacacacaagttacactttcattcacccaa 11364157  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 11376940 - 11376888
Alignment:
Q  46 gctatataagcgtgactcagtgtcacgctcaaggtacactttcattcacccaa 98  Q
    ||||||||||||| |||||  ||||| |||||| |||||||||||| ||||||    
T  11376940 gctatataagcgttactcaacgtcacactcaagttacactttcatttacccaa 11376888  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 26620430 - 26620462
Alignment:
Q  50 tataagcgtgactcagtgtcacgctcaaggtac 82  Q
    |||||| ||||||||||||||||||||||||||    
T  26620430 tataagagtgactcagtgtcacgctcaaggtac 26620462  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 34273122 - 34273085
Alignment:
Q  131 tactgacttgagcattggagagttaacgtgcttgcagg 168  Q
    |||||||||||||||||||| | |||||||||||||||    
T  34273122 tactgacttgagcattggagtgctaacgtgcttgcagg 34273085  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 22997027 - 22996939
Alignment:
Q  30 attatcgtcctcctcagctatataagcgtgactcagtgtcacgctcaaggtacactttcattcacccaaatttcgcacacaatccacct 118  Q
    ||||||| |||| || ||||||||||| |||||  |||| |||||||| ||||  | ||||| |||||  ||||||||||||| |||||    
T  22997027 attatcgacctcttcggctatataagcatgactatgtgttacgctcaatgtactttctcattaacccatttttcgcacacaatacacct 22996939  T

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