View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21434_low_3 (Length: 582)
Name: NF21434_low_3
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 176 - 562
Target Start/End: Original strand, 11228146 - 11228532
Alignment:
| Q |
176 |
ttattgtggaactcaacaaaaggggacaaggagacgataatggtactaacttacttgtgaggttcttaggccaaatcgctaaaaagtcagcctattgtcc |
275 |
Q |
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| T |
11228146 |
ttattgtggggctcaacaaaaggggacaaggagacgataatggtactaacttacttgtgaggttcttaggccaaattgctaaaaaatcagcctattgtcc |
11228245 |
T |
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| Q |
276 |
tatatcagttgaaaggtgggatgagatgtccgaaaaatgtagtatagatcaatggcagtgtattgaggttattattttgactttgttaannnnnnnnngt |
375 |
Q |
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| T |
11228246 |
tatatcagttgaaaggtgggatgagatgtccgaaaaatgtagtatagatcaatggcagtgtatcgaggttattattttgactttgttaatttttgtttgt |
11228345 |
T |
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| Q |
376 |
ttgttgatgtgccttttatatcaaaatattgacctttaaatacatttttagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagta |
475 |
Q |
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| T |
11228346 |
ttgttgatgtgccttttatatcaaaatattgacctttaaatacatttttagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagta |
11228445 |
T |
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| Q |
476 |
cactaggggatagatggagatcctataaatatagcttaaggaatgcatacttctaccccaagaaaactaaagaagaaatacttgcta |
562 |
Q |
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| T |
11228446 |
cactaggggatagatggagatcctataaatatagcttaaggaatacatacttctaccccaagaaaactaaagaagaaatacttgcta |
11228532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 11228138 - 11228058
Alignment:
| Q |
87 |
gtcttttccaaatgccaaacctcagttgcttccatttttcgagttataatttctttggtacatgtatctaccaatagagac |
167 |
Q |
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| T |
11228138 |
gtcttctccaaatgccaaacctcagttgctaccatttttcgagttataatttctttggtacatgtatctaccaataaagac |
11228058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11227771 - 11227846
Alignment:
| Q |
1 |
aaatgttcagccacaacaccaacaaagcaacaataatcagtctggcccttccttaattcccattgttcagccacaa |
76 |
Q |
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| T |
11227771 |
aaatgttcagccataacaccaacaaagcaacaataatcagtctggcccttccttaattcccattattcagccacaa |
11227846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 11227715 - 11227783
Alignment:
| Q |
5 |
gttcagccacaacaccaacaaagcaacaataatcagtctggcccttccttaattcccattgttcagcca |
73 |
Q |
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| T |
11227715 |
gttcatccacaacaccaacaaagcaacaacaatcagtctggcccttccttaattccaaatgttcagcca |
11227783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 180 - 515
Target Start/End: Original strand, 13551673 - 13552007
Alignment:
| Q |
180 |
tgtggaactcaacaaaaggggacaaggagacgataatggtactaacttacttgtgaggttcttaggccaaatcgctaaaaagtcagcctattgtcctata |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13551673 |
tgtggaactcaacaaaaggggacaaggagacgataatggtacaaacttacttgtgaggttcttaggccaaatcgctaaaaagtcagtctattgtcctata |
13551772 |
T |
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| Q |
280 |
tcagttgaaaggtgggatgagatgtccgaaaaatgtagtatagatcaatggcagtgtattgaggttattattttgactttgttaannnnnnnnngtttgt |
379 |
Q |
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| T |
13551773 |
tcagttgaaagatgggatgagatgtccgaaaaatgtagtatagatcaatggcagtgtattgaggtttatattttgactttgttaa-ttttttttgtttgt |
13551871 |
T |
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| Q |
380 |
tgatgtgccttttatatcaaaatattgacctttaaatacatttttagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagtacact |
479 |
Q |
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| T |
13551872 |
tgatgcgctttttatatcaaaatattgacctttaaatacatttctagaaacattttgagtttgactatgctgctggaatcaaatgggtgaggagtacact |
13551971 |
T |
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| Q |
480 |
aggggatagatggagatcctataaatatagcttaag |
515 |
Q |
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| T |
13551972 |
agcggatagatggagatcctataaatatagcttaag |
13552007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 13551660 - 13551622
Alignment:
| Q |
87 |
gtcttttccaaatgccaaacctcagttgcttccattttt |
125 |
Q |
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| T |
13551660 |
gtcttctccaaatgccaaacctcagttgctaccattttt |
13551622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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