View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21434_low_5 (Length: 450)

Name: NF21434_low_5
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21434_low_5
NF21434_low_5
[»] chr5 (11 HSPs)
chr5 (13-432)||(6731495-6731919)
chr5 (21-264)||(6716370-6716613)
chr5 (21-157)||(6773811-6773947)
chr5 (24-104)||(6738915-6738995)
chr5 (24-104)||(6748967-6749047)
chr5 (21-281)||(7096767-7097027)
chr5 (21-108)||(6724287-6724374)
chr5 (84-330)||(6761852-6762091)
chr5 (14-52)||(6761812-6761850)
chr5 (322-370)||(6724617-6724665)
chr5 (129-177)||(6749072-6749120)
[»] chr8 (2 HSPs)
chr8 (65-107)||(33912557-33912599)
chr8 (149-177)||(33974374-33974402)


Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Original strand, 6731495 - 6731919
Alignment:
Q  13 aatataagatcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6731495 aatataagatcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagattaataatattggatatat 6731594  T
Q  113 actaattttccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6731595 actaattttccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtaca 6731694  T
Q  213 atgcacttcaaattgggagttcttgagacggcaacaacgaagatgtttccacgaaatttggctagtcaagacnnnnnnngctttctaaatcaatgagaat 312  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  6731695 atgtacttcaaattgggagttcttgagacggtaacaacgaagatgtttccacgaaatttggctagtcaagacaaaaaaagctttctaaatcaatgagaat 6731794  T
Q  313 ga-----attgtattgaaatgaactaaaattgtttggataatttttatgattgaattccaaataccttggatttgtggatcccaagaaaggttcatttga 407  Q
    ||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6731795 gaattgtattgtattgaaatgaactaaaattgtttggataatttttatgattgaattccaaataccttggatttgtggatcccaagaaaggttcatttga 6731894  T
Q  408 agagtgggtttaacagaagcaccca 432  Q
    |||||||||||||||||||||||||    
T  6731895 agagtgggtttaacagaagcaccca 6731919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 6716370 - 6716613
Alignment:
Q  21 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattt 120  Q
    |||||||||||||||| ||||||| ||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | | || ||    
T  6716370 atcttataatctggcatttggaatttgaacctctcaacaaggccttctgagccaggccaaacatcatccaagactaataatattggatttctcccaactt 6716469  T
Q  121 tccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtacaatgcactt 220  Q
     ||  |  |||||||||||   |||||| || ||||||||| ||||||||||||||| || ||| |||||| |  | || || ||||||||||||  |||    
T  6716470 gcctcagcagaagtcccaaccggttaatggcgtcttcatcagtttgaaactcaggcacccgaagcccacagtgttcgaatagcgtttgtacaatgttctt 6716569  T
Q  221 caaattgggagttcttgagacggcaacaacgaagatgtttccac 264  Q
    ||| ||||||||| ||||||||| ||||| ||||||||||||||    
T  6716570 caagttgggagtttttgagacggtaacaaagaagatgtttccac 6716613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 6773811 - 6773947
Alignment:
Q  21 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattt 120  Q
    ||||||||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||    
T  6773811 atcttataatctggcaatttgaatttgaacttctcaacaaggccttctgagccaggccaaacatcatccaagactaataatattggatatctaccaactt 6773910  T
Q  121 tccaaaatagaagtcccaattcgttaattgcatcttc 157  Q
     ||  |  |||| |||||||  |||||||||||||||    
T  6773911 gcctcagcagaattcccaatcggttaattgcatcttc 6773947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 6738915 - 6738995
Alignment:
Q  24 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 104  Q
    |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6738915 ttataatctggcaatttgaatgtgaacttctcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 6738995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 6748967 - 6749047
Alignment:
Q  24 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 104  Q
    ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6748967 ttataatctggcaattggaatttgaacttctcaacaaggttttctgagccaggccaaacatcatccaagactaataatatt 6749047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 7097027 - 7096767
Alignment:
Q  21 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattt 120  Q
    ||||||||||||| || ||||||| |||| || |||||||||| |||||||  |||||||||||||||||||||||||| |||||||| | ||| || ||    
T  7097027 atcttataatctgacatttggaatttgaaattctcaacaaggccttctgagttaggccaaacatcatccaagactaatagtattggatttctaccaactt 7096928  T
Q  121 tccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtacaatgcactt 220  Q
     ||  || || |||||||||  ||||||||||||||||||  |||||||||| || | || |  ||||||| |  |||| ||||  || ||||||  |||    
T  7096927 gcctcaacagtagtcccaatcggttaattgcatcttcatcggtttgaaactcgggaacccgacatccacagtgttcaaatagtgcctgcacaatgttctt 7096828  T
Q  221 caaattgggagttcttgagacggcaacaacgaagatgtttccacgaaatttggctagtcaa 281  Q
    ||| ||||||||| |||||| ||  |||| |||||||||| ||| ||| ||| ||| ||||    
T  7096827 caagttgggagtttttgagatggtgacaaagaagatgttttcaccaaacttgcctattcaa 7096767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 6724287 - 6724374
Alignment:
Q  21 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggat 108  Q
    |||||||||||||||||||  ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724287 atcttataatctggcaatttaaatttgaacttctccacaaggctttctgagccaggccaaacatcatccaagactaataatattggat 6724374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 330
Target Start/End: Original strand, 6761852 - 6762091
Alignment:
Q  84 tcatccaagactaataatattggatatatactaattttccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaa 183  Q
    |||||||||| ||||||||||||| ||   | ||||| || ||||||||||||||||  || |||||||||||| |   |||||||||| |||| |||||    
T  6761852 tcatccaagagtaataatattggaaat---ccaatttccctaaatagaagtcccaatatgtcaattgcatcttcgt---tttgaaactccggcacccaaa 6761945  T
Q  184 gtccacagcgag-caaacagtgtttgtacaatgcacttcaaattgggagttcttgagacggcaacaacgaagatgtttccacgaaatttggctagtcaag 282  Q
     ||||||  ||| |||  | ||| |||||||||  |||||| |||||||||||||||| |   |||  ||||||||||| || ||| ||| ||||||||     
T  6761946 atccaca-tgagtcaattattgtctgtacaatgttcttcaagttgggagttcttgagaggcggacatagaagatgtttctaccaaacttgcctagtcaaa 6762044  T
Q  283 acnnnnnnngctttctaaatcaatgagaatgaattgtattgaaatgaa 330  Q
    ||       |||||||||||||| ||||| | ||| ||||||||||||    
T  6762045 ac-aaaatagctttctaaatcaaggagaaaggattttattgaaatgaa 6762091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 6761812 - 6761850
Alignment:
Q  14 atataagatcttataatctggcaattggaatctgaactt 52  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  6761812 atataagatcttataatctggcaattggaatttgaactt 6761850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 6724617 - 6724665
Alignment:
Q  322 tgaaatgaactaaaattgtttggataatttttatgattgaattccaaat 370  Q
    ||||||||| ||||||||| |||||| ||||||||||||||| ||||||    
T  6724617 tgaaatgaaataaaattgtatggatattttttatgattgaatgccaaat 6724665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 6749072 - 6749120
Alignment:
Q  129 agaagtcccaattcgttaattgcatcttcatcactttgaaactcaggca 177  Q
    ||| ||||||||| ||||||||||||||| | ||||||||| |||||||    
T  6749072 agatgtcccaattggttaattgcatcttcgttactttgaaaatcaggca 6749120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 33912599 - 33912557
Alignment:
Q  65 ttctgagccaggccaaacatcatccaagactaataatattgga 107  Q
    ||||||||| |||||||||||||||| |||||| |||||||||    
T  33912599 ttctgagccgggccaaacatcatccaggactaacaatattgga 33912557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 33974402 - 33974374
Alignment:
Q  149 tgcatcttcatcactttgaaactcaggca 177  Q
    |||||||||||||||||||||||||||||    
T  33974402 tgcatcttcatcactttgaaactcaggca 33974374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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