View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21434_low_9 (Length: 322)
Name: NF21434_low_9
Description: NF21434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21434_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 37066445 - 37066155
Alignment:
| Q |
14 |
agatataaaccttctccgtttcatgatttgaaaatttgatttcaaatcaaagtcatatgtatactgtctccattctttattctttaagagtggtttttta |
113 |
Q |
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| T |
37066445 |
agatataaaccttctccgtttcatgatttgaaaatttgatttcaaatcatagtcatatgtatactgtctccattttttattctttaagagtggtttttta |
37066346 |
T |
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| Q |
114 |
aacttggataaatcccaaaacgtatttatttcgtcaattttcatttagattcattcttcttctcttttgatgaacacaaaattcttaggctatccatatg |
213 |
Q |
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| T |
37066345 |
aacttggataaatcccaaaacgtatttatttcgtcaattttcatttagattcattcttcttctctttggatgaacacaaaattcttaggctatccatatg |
37066246 |
T |
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| Q |
214 |
taccaattgaagaggtgagatgcttgtggataattattgttggcaattgaattaataatttgaattagtcatgcatatattgtgcgataaa |
304 |
Q |
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| T |
37066245 |
taccaattgaagaggtgagatgcttgtggataattattgttggcaattgaattaataatttgaattagtcatgcatatactgtgcgataaa |
37066155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 51924758 - 51924715
Alignment:
| Q |
217 |
caattgaagaggtgagatgcttgtggataattattgttggcaat |
260 |
Q |
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| T |
51924758 |
caattgaagaggtgagatgctcgtggataattattgtaggcaat |
51924715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 35 - 304
Target Start/End: Complemental strand, 41608916 - 41608650
Alignment:
| Q |
35 |
catgatttgaaaatttgatttcaaatcaaagtcatatgtatactgtctccattctttattctttaagagtggttttttaaacttggataaatcccaaaac |
134 |
Q |
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| T |
41608916 |
catgatttgaaaatttgatttcaaatcatagtcatatgtatactgtctccattttttattctttaagagtggttttttaaacttggataaatcccaaaac |
41608817 |
T |
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| Q |
135 |
gtatttatttcgtcaattttcatttagattcattcttcttctcttttgatgaacacaaaattcttaggctatccatatgtaccaattgaagaggtgagat |
234 |
Q |
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| T |
41608816 |
gtatttatttcgtcaattttcatttagattcattc---ttctctttggatgaacacaaaattcttaggctatctatatgtaccaattgaagaggtgagat |
41608720 |
T |
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| Q |
235 |
gcttgtggataattattgttggcaattgaattaataatttgaattagtcatgcatatattgtgcgataaa |
304 |
Q |
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| T |
41608719 |
gcttgtggataattatttttggcaattgaattaataatttgaattagtcatgcatatactgtgcgataaa |
41608650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 39322371 - 39322287
Alignment:
| Q |
169 |
cttcttctcttttgatgaacacaaaattcttaggctatccatatgtaccaattgaagaggtgagatgcttgtggataattattgt |
253 |
Q |
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| T |
39322371 |
cttcttctctttggatgaacgctgaattcctaggctatccataagtaccaattgaagatgagagatgcttgcggatgattattgt |
39322287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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