View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21435_high_10 (Length: 410)

Name: NF21435_high_10
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21435_high_10
NF21435_high_10
[»] chr2 (20 HSPs)
chr2 (19-408)||(41073091-41073473)
chr2 (50-137)||(22440150-22440237)
chr2 (54-125)||(15080558-15080629)
chr2 (58-137)||(24765347-24765426)
chr2 (51-137)||(24792001-24792088)
chr2 (90-139)||(1346748-1346797)
chr2 (53-141)||(19890198-19890287)
chr2 (33-141)||(20128338-20128445)
chr2 (33-137)||(24762705-24762808)
chr2 (58-110)||(35022646-35022698)
chr2 (80-140)||(36866418-36866478)
chr2 (50-114)||(43791921-43791985)
chr2 (58-137)||(815008-815087)
chr2 (59-114)||(15690187-15690242)
chr2 (61-139)||(39309766-39309844)
chr2 (80-137)||(4762361-4762418)
chr2 (80-137)||(9448991-9449047)
chr2 (80-137)||(31017345-31017402)
chr2 (84-137)||(37978506-37978559)
chr2 (58-141)||(19514879-19514963)
[»] chr4 (23 HSPs)
chr4 (58-137)||(12618709-12618788)
chr4 (49-114)||(47461048-47461113)
chr4 (62-141)||(23504749-23504828)
chr4 (50-138)||(5798993-5799081)
chr4 (58-138)||(29256796-29256876)
chr4 (31-138)||(11260568-11260675)
chr4 (48-125)||(14948992-14949069)
chr4 (49-110)||(16556006-16556067)
chr4 (64-128)||(50086429-50086493)
chr4 (53-92)||(32104303-32104342)
chr4 (48-141)||(7852548-7852642)
chr4 (80-137)||(51736366-51736423)
chr4 (80-141)||(51834922-51834983)
chr4 (53-137)||(48315936-48316020)
chr4 (64-128)||(50343857-50343921)
chr4 (33-108)||(32692943-32693017)
chr4 (62-96)||(2076846-2076880)
chr4 (58-96)||(54974734-54974772)
chr4 (61-138)||(4394919-4394996)
chr4 (80-141)||(49400620-49400681)
chr4 (70-110)||(9629788-9629828)
chr4 (89-141)||(49084447-49084499)
chr4 (90-138)||(54503298-54503346)
[»] chr7 (11 HSPs)
chr7 (37-137)||(39156032-39156131)
chr7 (50-114)||(2347452-2347516)
chr7 (57-139)||(35599816-35599898)
chr7 (51-137)||(46726148-46726234)
chr7 (48-108)||(2959579-2959639)
chr7 (57-137)||(32699766-32699845)
chr7 (63-114)||(4133810-4133861)
chr7 (95-138)||(18219137-18219180)
chr7 (52-98)||(7723357-7723403)
chr7 (80-138)||(25886181-25886239)
chr7 (89-138)||(29711539-29711588)
[»] chr1 (15 HSPs)
chr1 (48-108)||(2484919-2484979)
chr1 (59-137)||(26604948-26605026)
chr1 (87-141)||(8794424-8794478)
chr1 (87-137)||(38748765-38748815)
chr1 (33-110)||(9534411-9534487)
chr1 (62-141)||(39150590-39150669)
chr1 (47-114)||(50222611-50222678)
chr1 (73-139)||(4617934-4618000)
chr1 (80-141)||(8365511-8365572)
chr1 (43-92)||(30596527-30596576)
chr1 (48-137)||(32562358-32562447)
chr1 (60-93)||(35438046-35438079)
chr1 (64-128)||(14774123-14774187)
chr1 (76-128)||(44329485-44329537)
chr1 (80-128)||(44329617-44329665)
[»] chr3 (10 HSPs)
chr3 (50-137)||(25753497-25753584)
chr3 (35-141)||(48811361-48811466)
chr3 (50-138)||(38156511-38156598)
chr3 (91-141)||(8101457-8101507)
chr3 (51-137)||(45529127-45529213)
chr3 (58-119)||(1675967-1676028)
chr3 (37-114)||(19898096-19898173)
chr3 (78-138)||(2568199-2568259)
chr3 (48-92)||(29793924-29793968)
chr3 (62-114)||(55110062-55110114)
[»] chr5 (6 HSPs)
chr5 (48-137)||(9276584-9276674)
chr5 (50-114)||(31558033-31558097)
chr5 (53-137)||(41583555-41583639)
chr5 (48-134)||(39568121-39568208)
chr5 (59-120)||(7606939-7607000)
chr5 (49-137)||(24173193-24173281)
[»] chr8 (13 HSPs)
chr8 (48-108)||(44960504-44960564)
chr8 (53-96)||(40852101-40852144)
chr8 (80-137)||(33364302-33364359)
chr8 (80-140)||(4384172-4384232)
chr8 (55-141)||(1369870-1369957)
chr8 (87-137)||(10893475-10893525)
chr8 (63-137)||(27734360-27734434)
chr8 (85-139)||(27801268-27801322)
chr8 (58-128)||(32646840-32646909)
chr8 (85-137)||(167886-167938)
chr8 (53-137)||(11727910-11727993)
chr8 (62-114)||(36819700-36819752)
chr8 (53-129)||(39691124-39691200)
[»] scaffold1444 (1 HSPs)
scaffold1444 (62-141)||(951-1030)
[»] chr6 (6 HSPs)
chr6 (58-137)||(15588667-15588746)
chr6 (85-139)||(6555080-6555134)
chr6 (51-108)||(4806511-4806568)
chr6 (89-138)||(23399121-23399170)
chr6 (59-138)||(9301919-9301999)
chr6 (62-114)||(30396282-30396334)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 41073091 - 41073473
Alignment:
Q  19 ttaacccctccagaacactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaa 118  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41073091 ttaacccctccggaacactctttaaagaccttt-aataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctga 41073189  T
Q  119 aagaataatttctaaatttaggagcagcaaaacctatacttaaattaaagtttttgttttaagactaaattaatgtaggatcgtaaattagtaaatcact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41073190 aagaataatttctaaatttaggagcagcaaaacctatacttaaattaaagtttttgttttaagactaaattaatgtaggatcgtaaattagtaaatcact 41073289  T
Q  219 aataaaattaagagttccccaaatttatcaaagtttccatgaacttctaagagtttactnnnnnnnnnnnnngagtttacatactaattaaatcgttttt 318  Q
    ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||             ||||||||||||||||||| ||||||||    
T  41073290 aataaaattaagagtttaccaaatttatcaaagtttccatcaacttctaagagtttact-----aaaaaaaagagtttacatactaattaactcgttttt 41073384  T
Q  319 acgt---atcgtaaactcattaaagttaagagttaacttaatagtttgacaatcttgtttacttgtagtacttgcaccccctttgcttctcct 408  Q
    ||||   |||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  41073385 acgtaaaatcgtaaactcattaaagttaagagttaactta----tttgacaatcttgtttacttgtagtacttgcacccccgttgattctcct 41073473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 22440150 - 22440237
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||| ||||||||||||||||||||| || |||||||||||||| || ||| |||||| ||| |  ||||||| |||||||||||    
T  22440150 tttaatagtaagtttttatgaaaatatatgtaatcaatgcattgaaacttgtaacatttgaattttttgaagaatattttctaaattt 22440237  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 15080629 - 15080558
Alignment:
Q  54 ataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaata 125  Q
    |||||||||| |||| ||||| ||||||  ||||||||| ||||||||||||||| ||||| ||||||||||    
T  15080629 ataataagttcttataaaaatttatataaccaatgcattaaaatttataatatttaattttttaaaagaata 15080558  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 24765426 - 24765347
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||| |||| ||||||| | || ||||||||||| ||||| |||||||||||||| | || ||||| |||||||||||    
T  24765426 taagttattataaaaatatgtgtaatcaatgcattggaatttgtaatatttgatttttttaaggaatattttctaaattt 24765347  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 24792088 - 24792001
Alignment:
Q  51 ttaataataagtttttatgaaaat-atatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||| ||||||||||| ||||| |||| || ||||||||||| ||||| ||| |||||| ||| | |||||||| |||||||||||    
T  24792088 ttaatagtaagtttttataaaaattatatgtaatcaatgcattggaatttgtaacatttgacttttttaaagaatattttctaaattt 24792001  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 1346797 - 1346748
Alignment:
Q  90 attgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    |||| |||||||||||||||||| | |||| |||||||||||||||||||    
T  1346797 attggaatttataatatttgattatttaaaggaataatttctaaatttag 1346748  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 19890198 - 19890287
Alignment:
Q  53 aataataagttttta-tgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    ||||||||||||||| ||||||  | | |||| ||||||||| || || ||||| |||| ||| ||||||||||||| ||||||||||||    
T  19890198 aataataagtttttaatgaaaagttgtgtattaaatgcattggaaattgtaatagttgactttttaaaagaataattactaaatttagga 19890287  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 20128445 - 20128338
Alignment:
Q  33 acactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttcta 132  Q
    |||||||||||| || ||||||||  || ||||||| ||||||  | || ||||||||||| ||||| ||| |||||| ||| | ||||||||| || ||    
T  20128445 acactctttaaacac-ttttaatagaaattttttataaaaatacgtgtaatcaatgcattggaatttgtaacatttgacttttttaaagaataaattata 20128347  T
Q  133 aatttagga 141  Q
    |||||||||    
T  20128346 aatttagga 20128338  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 24762705 - 24762808
Alignment:
Q  33 acactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttcta 132  Q
    ||||||||||| |||| |||  || ||||||||||| ||||||| |||| |||||  |||| ||||| |||||||||| ||| | || ||||| ||||||    
T  24762705 acactctttaaggaccatttc-tagtaagtttttataaaaatatgtataatcaatatattggaatttgtaatatttgacttttttaaggaatattttcta 24762803  T
Q  133 aattt 137  Q
    |||||    
T  24762804 aattt 24762808  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 35022698 - 35022646
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttga 110  Q
    ||||||||||| ||||||| | || |||||||||| |||||||||||||||||    
T  35022698 taagtttttattaaaatatgtgtaatcaatgcattaaaatttataatatttga 35022646  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 36866418 - 36866478
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagg 140  Q
    |||| |||||||||||||||||||||||||| ||| | ||  ||| |||||||||||||||    
T  36866418 tatttaatgcattgaaatttataatatttgagtttttgaatcaatcatttctaaatttagg 36866478  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 43791921 - 43791985
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||||||||||||||||| ||||| |||||| | ||||||||  ||||| ||| ||||||||||    
T  43791921 tttaataataagtttttataaaaatctatataattaatgcattagaatttgtaacatttgatttt 43791985  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 815087 - 815008
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||||||||||||||   | || ||||||||||| ||||| | | |||||||||| | ||| ||||||||||||||||    
T  815087 taagtttttatgaaaatcggtgtaatcaatgcattggaatttgtgacatttgatttttttaaaaaataatttctaaattt 815008  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 15690187 - 15690242
Alignment:
Q  59 aagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    |||||||||| ||||||| | || |||||||||| |||||| ||||||||||||||    
T  15690187 aagtttttataaaaatatgtgtaatcaatgcattaaaatttgtaatatttgatttt 15690242  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 39309844 - 39309766
Alignment:
Q  61 gtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    |||||||| ||||||| |||| ||||| |||||||||||  ||||||||| ||  | |||||||| |||||||| ||||    
T  39309844 gtttttataaaaatatgtataatcaattcattgaaatttgaaatatttgacttatttaaagaatattttctaaacttag 39309766  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 4762418 - 4762361
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| |||||||||||| |||||||| |||| ||| ||||| ||||||| ||||||||    
T  4762418 tattgaatgcattgaaaattataatagttgactttataaaataataattactaaattt 4762361  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 9448991 - 9449047
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| |||| ||||||| |||||||| |||||||| ||||||||||||| ||||||||    
T  9448991 tattgaatgtattgaaaattataatagttgatttt-taaaagaataattactaaattt 9449047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 31017345 - 31017402
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| |||||||||||| ||| ||||||||| ||| | ||||||||||| ||||||||    
T  31017345 tattaaatgcattgaaaattaaaatatttgacttttttaaagaataattactaaattt 31017402  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 37978559 - 37978506
Alignment:
Q  84 caatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||| |||||| |||||||||| ||| | |||||||| |||||||||||    
T  37978559 caatgcattaaaatttgtaatatttgacttttttaaagaatattttctaaattt 37978506  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 19514963 - 19514879
Alignment:
Q  58 taagtttt-tatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||||||| ||||||||  | |||||||| |||||||| | |||||||| |||| |||  ||||||||||||  |||||||||||    
T  19514963 taagttttatatgaaaagttgtatattcattgcattgataattataatagttgacttttaaaaagaataattgttaaatttagga 19514879  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 12618709 - 12618788
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||    
T  12618709 taagtttttatgaaaatttgtataatcaatgcattgaaatttataacatttgactttttaaaaaaataatttctaaattt 12618788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 47461048 - 47461113
Alignment:
Q  49 ttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  47461048 ttttaatagtaagtttttatgaaaatatatataatcaatacattgaaatttataatatttaatttt 47461113  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 23504828 - 23504749
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    ||||||||||||| ||| |||||||| ||| |||| || ||||| |||||||| ||||||||||||||||||||||||||    
T  23504828 tttttatgaaaatgtatgtattcaatacatcgaaaattttaatagttgattttttaaaagaataatttctaaatttagga 23504749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 5798993 - 5799081
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    ||||||||||| ||||||| ||||| | |||| |||| ||||| |||||| |||||||||| ||| |||||||||| ||||||||||||    
T  5798993 tttaataataaatttttataaaaatttgtataatcaacgcatttaaatttgtaatatttgactttttaaaagaatattttctaaattta 5799081  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 29256796 - 29256876
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||| ||||||||||  || || |||||||||||||||||||||||| ||||| | || ||||||||| ||||||||    
T  29256796 taagttttcatgaaaatatgaatgtttaatgcattgaaatttataatattttattttttgaaggaataatttttaaattta 29256876  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 11260675 - 11260568
Alignment:
Q  31 gaacactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttc 130  Q
    |||||||||||||  | |||| |||| ||| ||| ||||||||||||| || ||| ||||||||||||| ||| |||||| ||| | |||||||| |||     
T  11260675 gaacactctttaagcatctttaaatagtaaatttatatgaaaatatatgtaatcattgcattgaaatttgtaacatttgacttttttaaagaatattttt 11260576  T
Q  131 taaattta 138  Q
    ||||||||    
T  11260575 taaattta 11260568  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 14948992 - 14949069
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaata 125  Q
    |||||||||| |||||||||||||||| | | || ||||||||||||||||| ||| |||||| ||| | ||||||||    
T  14948992 cttttaataacaagtttttatgaaaatttgtgtaatcaatgcattgaaatttgtaacatttgacttttttaaagaata 14949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 16556067 - 16556006
Alignment:
Q  49 ttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttga 110  Q
    |||||||||||||||||||| ||||| | | || ||||||||||||||||| ||||||||||    
T  16556067 ttttaataataagtttttataaaaatttgtgtaatcaatgcattgaaatttgtaatatttga 16556006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 50086429 - 50086493
Alignment:
Q  64 tttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    ||||||||||||| | ||||||||||||||||| | | ||||||||||||| | |||||||||||    
T  50086429 tttatgaaaatatgtgtattcaatgcattgaaaatcaaaatatttgatttttttaaagaataatt 50086493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 32104342 - 32104303
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcatt 92  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  32104342 aataataagtttttatgaaaatttatatattcaatgcatt 32104303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 7852548 - 7852642
Alignment:
Q  48 cttttaataataagttttta-tgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||| |||| |||||||||| ||||||  | | |||| |||||||||||| || ||||| || ||||| ||||||||||||| ||||||||||||    
T  7852548 ctttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgaaaattgtaatagttaattttttaaaagaataattactaaatttagga 7852642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 51736423 - 51736366
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||| ||||||| |||||||| |||| ||| ||||||||||||| ||||||||    
T  51736423 tattcaatgtattgaaaattataatagttgactttttaaaagaataattgctaaattt 51736366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 51834983 - 51834922
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||| ||||||||| || |||||||| |||| ||| ||||||||||||| ||||||||||||    
T  51834983 tatttaatgcattggaaattataatagttgactttttaaaagaataattgctaaatttagga 51834922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 48316020 - 48315936
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| ||||||||||||||||  | | || ||||||||||||||||| ||| |||||| ||| | |||||||| |||| ||||||    
T  48316020 aatattaagtttttatgaaaagttgtgtaatcaatgcattgaaatttgtaacatttgacttttttaaagaatattttcaaaattt 48315936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 50343857 - 50343921
Alignment:
Q  64 tttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    |||||||||||| ||||| ||||| |||||||| ||| ||||||||| ||| | |||||||||||    
T  50343857 tttatgaaaatacatataatcaatacattgaaaattaaaatatttgacttttttaaagaataatt 50343921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 32692943 - 32693017
Alignment:
Q  33 acactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatattt 108  Q
    ||||||||||| |||| || |||| ||||||||||||||||||| | || |||||| |||||||||| ||| ||||    
T  32692943 acactctttaaggaccatt-aatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaacattt 32693017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 2076880 - 2076846
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaa 96  Q
    |||||||||||||||||||| ||||||||||||||    
T  2076880 tttttatgaaaatatatataatcaatgcattgaaa 2076846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 54974734 - 54974772
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaa 96  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  54974734 taagtttttataaaaatttatatattcaatgcattgaaa 54974772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 4394996 - 4394919
Alignment:
Q  61 gtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||| ||||||  | ||||||||| ||| ||| ||| ||||||||||||| | ||||||||||| || ||||||    
T  4394996 gtttttataaaaatacgtgtattcaatgtattaaaaattaaaatatttgatttttttaaagaataattacttaattta 4394919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 49400681 - 49400620
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||| ||| ||||| || || ||||| |||||||| ||||||||||||| ||||||||||||    
T  49400681 tattaaatacattggaaattgtaatagttgattttttaaaagaataattactaaatttagga 49400620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 9629828 - 9629788
Alignment:
Q  70 aaaatatatatattcaatgcattgaaatttataatatttga 110  Q
    |||||||||||||| ||| ||||||||||| ||||||||||    
T  9629828 aaaatatatatatttaatacattgaaatttgtaatatttga 9629788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 49084447 - 49084499
Alignment:
Q  89 cattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||||||| || ||||| |||| ||| ||||||||||||| ||||||||||||    
T  49084447 cattgaaaattgtaatagttgactttttaaaagaataattactaaatttagga 49084499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 54503346 - 54503298
Alignment:
Q  90 attgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    ||||||||||||||||||||| ||| |||||||| |||||  |||||||    
T  54503346 attgaaatttataatatttgactttttaaaagaacaattttaaaattta 54503298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 39156131 - 39156032
Alignment:
Q  37 tctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatt 136  Q
    ||||||||||||||| |||| ||| |||||||||||||  ||||||| | |||||||||||||| ||||||||| ||| ||||  ||||| || ||||||    
T  39156131 tctttaaagaccttt-aatagtaaatttttatgaaaatccatatattaagtgcattgaaatttaaaatatttgactttttaaagaaataacttttaaatt 39156033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 2347516 - 2347452
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||||| ||| ||||||| ||||| ||| || ||||||||||||||||| ||||||||||||||    
T  2347516 tttaatagtaaatttttattaaaatttatgtaatcaatgcattgaaatttgtaatatttgatttt 2347452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 35599816 - 35599898
Alignment:
Q  57 ataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    |||| ||||||||||||  ||| ||||||||||||||||||||  | ||||||| ||| | |||||||||||||  |||||||    
T  35599816 ataactttttatgaaaagttatgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaatttag 35599898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 46726234 - 46726148
Alignment:
Q  51 ttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||| ||| ||||||||||||  ||| || ||||||||||||||||| ||| |||||| ||| | |||||||| ||| |||||||    
T  46726234 ttaatagtaaatttttatgaaaaactatgtaatcaatgcattgaaatttgtaacatttgacttttttaaagaatattttttaaattt 46726148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 2959579 - 2959639
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatattt 108  Q
    ||||||||||||| ||||||||||||  ||| || |||||||||| |||||||||| ||||    
T  2959579 cttttaataataaatttttatgaaaaattatgtaatcaatgcattaaaatttataacattt 2959639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 32699766 - 32699845
Alignment:
Q  57 ataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||||||||||| ||||||||| | || | ||||| || ||||| |||||||| ||||| |||||||| |||||||    
T  32699766 ataagtttttatgaaaaaatatatatttattgtactgaaaattgtaatagttgattttttaaaa-aataatttttaaattt 32699845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 4133810 - 4133861
Alignment:
Q  63 ttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    |||||||||||| | |||| ||||||||||||||||| ||| ||||||||||    
T  4133810 ttttatgaaaatctttataatcaatgcattgaaatttgtaacatttgatttt 4133861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 18219137 - 18219180
Alignment:
Q  95 aatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||||||||||| ||| | |||||||||||||||||||||    
T  18219137 aatttataatatttgagttttttaaagaataatttctaaattta 18219180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 7723403 - 7723357
Alignment:
Q  52 taataataagtttttatgaaaatatatatattcaatgcattgaaatt 98  Q
    ||||||||||||||||| ||||| | ||||||||||||||| |||||    
T  7723403 taataataagtttttataaaaatttgtatattcaatgcattaaaatt 7723357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 25886239 - 25886181
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||| |||| ||||||| || ||||| |||| ||||||| |||||||||||||||||||    
T  25886239 tattaaatgtattgaaaattgtaatagttgactttctaagagaataatttctaaattta 25886181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 29711539 - 29711588
Alignment:
Q  89 cattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||| |||||||  |||||||| |||||||| ||||||||||||||    
T  29711539 cattgaaaattataattgttgattttttaaaagaaaaatttctaaattta 29711588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 2484919 - 2484979
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatattt 108  Q
    ||||| ||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  2484919 cttttgatagtaagcttttatgaaaatttatatatttaatgcattgaaatttataatattt 2484979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 26604948 - 26605026
Alignment:
Q  59 aagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||||||||||||| | ||||| ||||| |||||||||| ||||| || | ||| |||||||||||||| |||||||    
T  26604948 aagtttttatgaaaatttgtatatccaatgtattgaaatttgtaataatttactttttaaaagaataatttttaaattt 26605026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 8794478 - 8794424
Alignment:
Q  87 tgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||||||||| |||||||| |||| ||| ||||||||||||| ||||||||||||    
T  8794478 tgcattgaaaattataatagttgactttttaaaagaataattactaaatttagga 8794424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 38748765 - 38748815
Alignment:
Q  87 tgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||||||| |||||||| |||| ||| ||||||||||||||||||||||    
T  38748765 tgcattgaaaattataatagttgactttttaaaagaataatttctaaattt 38748815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 9534487 - 9534411
Alignment:
Q  33 acactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttga 110  Q
    |||||||||||  |||||| |||||||| ||||||||||||| | || | | | ||||||||||||||||||||||||    
T  9534487 acactctttaagcaccttt-aataataaatttttatgaaaatttgtaaaattagtgcattgaaatttataatatttga 9534411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 39150669 - 39150590
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||| |||||||| ||| |||| ||||||||| || || ||||| |||| ||| || |||||||||| ||||||||||||    
T  39150669 ttttaatgaaaatttatgtattgaatgcattgtaaattgtaatagttgactttttacaagaataattactaaatttagga 39150590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 50222611 - 50222678
Alignment:
Q  47 ccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||| |||| ||| ||||||||||||||  | || |||||||||||||| ||| |||||||||||||    
T  50222611 cctttaaatagtaattttttatgaaaataagtgtaatcaatgcattgaaaattaaaatatttgatttt 50222678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 4618000 - 4617934
Alignment:
Q  73 atatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    |||||| ||||||||||||| ||| || || |||||| |||| ||||| |||||||||| |||||||    
T  4618000 atatatgtattcaatgcattcaaaattgtattatttggttttttaaaaaaataatttcttaatttag 4617934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 8365572 - 8365511
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||| |||||||||||  || ||||| |||||||| |||||||||||||  |||||||||||    
T  8365572 tattgaatgcattgaagattgtaatagttgattttttaaaagaataattattaaatttagga 8365511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 30596527 - 30596576
Alignment:
Q  43 aagaccttttaataataagtttttatgaaaatatatatattcaatgcatt 92  Q
    |||||||||||||||||| ||||||| ||||||| | || ||||||||||    
T  30596527 aagaccttttaataataattttttataaaaatatgtgtaatcaatgcatt 30596576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 32562358 - 32562447
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| |||| ||||||||||| ||||  | | |||||| |||||||||| || ||||| |||| ||| ||||| ||||||| ||||||||    
T  32562358 ctttaaatagtaagtttttataaaaaattgtgtattcactgcattgaaaattgtaatagttgaatttttaaaataataattactaaattt 32562447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 35438046 - 35438079
Alignment:
Q  60 agtttttatgaaaatatatatattcaatgcattg 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  35438046 agtttttatgaaaatatgtatattcaatgcattg 35438079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 14774187 - 14774123
Alignment:
Q  64 tttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    ||||||||||| | ||||||||||||||||||| |   ||||||||||||| ||||  |||||||    
T  14774187 tttatgaaaatgtgtatattcaatgcattgaaaatcgaaatatttgattttttaaacaaataatt 14774123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 44329537 - 44329485
Alignment:
Q  76 tatatattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    |||||||| |||||| ||||| |||||||| |||| ||| |||||||||||||    
T  44329537 tatatattaaatgcactgaaaattataataattgactttttaaaagaataatt 44329485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 44329665 - 44329617
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    |||| |||||||||||| |||||||| |||| ||| |||||||||||||    
T  44329665 tattgaatgcattgaaaattataatagttgactttttaaaagaataatt 44329617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 25753584 - 25753497
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||| ||||||||||||||||| ||| || | |||||||||||| |||||| |||||| ||| |  ||||||| |||||||||||    
T  25753584 tttaatagtaagtttttatgaaaatttatgtaattaatgcattgaaacttataacatttgactttattgaagaatattttctaaattt 25753497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 48811361 - 48811466
Alignment:
Q  35 actctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaa 134  Q
    |||||||||| || |||||||| ||||||||||||||||  | | || ||||||||||||||||| ||| ||| || ||| | || ||||| ||||||||    
T  48811361 actctttaaaaac-ttttaatagtaagtttttatgaaaaattgtgtaatcaatgcattgaaatttgtaacattagacttttttaatgaatattttctaaa 48811459  T
Q  135 tttagga 141  Q
    |||||||    
T  48811460 tttagga 48811466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 38156511 - 38156598
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    ||||||| |||  |||||| ||||||| | || ||||||||||||||||| ||| |||||| ||| ||||| |||| ||||||||||||    
T  38156511 tttaatagtaaacttttattaaaatatgtgtaatcaatgcattgaaatttgtaacatttgactttttaaaa-aatactttctaaattta 38156598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 8101507 - 8101457
Alignment:
Q  91 ttgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    ||||||||| ||| |||||||||| | || |||||||||||||||||||||    
T  8101507 ttgaaatttgtaacatttgattttttgaatgaataatttctaaatttagga 8101457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 45529127 - 45529213
Alignment:
Q  51 ttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||| ||||||||||||||||| ||| || |||||||| ||||| || |||  ||||| ||| |  ||||||| |||||||||||    
T  45529127 ttaatagtaagtttttatgaaaatttatgtaatcaatgcactgaaacttgtaacgtttgacttttttgaagaatattttctaaattt 45529213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 1675967 - 1676028
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaa 119  Q
    |||||||| |||||||||||| |||| |||| ||| ||||||| ||||||| ||||| ||||    
T  1675967 taagttttaatgaaaatatatgtatttaatgaattaaaatttaaaatatttaattttttaaa 1676028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 19898096 - 19898173
Alignment:
Q  37 tctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||| |||||||||  ||  ||| ||||||||||||||| | || |||||||||||||| ||  |||||||||||||    
T  19898096 tcttttaagacctttacattgtaaatttttatgaaaatatgtgtaatcaatgcattgaaaattgaaatatttgatttt 19898173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 2568199 - 2568259
Alignment:
Q  78 tatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||||||||||  || |||||||| |||| |||  |||| |||||||||||||||||    
T  2568199 tatattcaatgcattataaattataataattgacttttaaaaaaaataatttctaaattta 2568259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 29793968 - 29793924
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcatt 92  Q
    |||| ||| |||||||||||| ||||||| |||||||||||||||    
T  29793968 ctttaaatgataagtttttataaaaatatgtatattcaatgcatt 29793924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 55110114 - 55110062
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||||||||||||||| || |||||||||||||| |   |||||||||||||    
T  55110114 tttttatgaaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttt 55110062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 9276584 - 9276674
Alignment:
Q  48 cttttaataataagttttta-tgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| |||| |||||||||| ||||||  ||| |||| |||||||||||| |||||||| |||||||| ||||| ||||||| ||||||||    
T  9276584 ctttaaatagtaagtttttaatgaaaagttatgtattgaatgcattgaaaattataatagttgattttttaaaaaaataattactaaattt 9276674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 31558033 - 31558097
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||||||||| ||||||||||||| |||||| | |||| |||||||||| ||| ||||||||||    
T  31558033 tttaataataaatttttatgaaaatttatataataaatgtattgaaatttgtaacatttgatttt 31558097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 41583639 - 41583555
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| ||| ||||||||||||| | | |||||||||||||| ||||| |||||||| | ||| | || |||||||||||||||||    
T  41583639 aatagtaaatttttatgaaaatctgtgtattcaatgcattggaatttgtaatatttaactttttgaaggaataatttctaaattt 41583555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 39568121 - 39568208
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttga-ttttctaaaagaataatttctaaa 134  Q
    |||| ||| ||| |||| ||||||||||||||||||||||  ||||||||||  | | ||||| |||||||||||||| |||| ||||    
T  39568121 ctttaaatgatatgtttatatgaaaatatatatattcaataaattgaaatttgaagtgtttgacttttctaaaagaatcatttttaaa 39568208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 7607000 - 7606939
Alignment:
Q  59 aagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaa 120  Q
    |||||||||  ||||||| | |||| ||||||||||||||| |||||||| ||||| |||||    
T  7607000 aagtttttacaaaaatatgtgtatttaatgcattgaaatttgtaatatttaattttttaaaa 7606939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 24173281 - 24173193
Alignment:
Q  49 ttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||||| |||| |||| ||||||||| | || | ||||||||| ||||| ||| |||| |||||  |||| |||| |||||||||||    
T  24173281 ttttaatagtaaggttttttgaaaatatttgtaattaatgcattggaatttgtaacatttaatttttaaaaaaaatattttctaaattt 24173193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 44960564 - 44960504
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatattt 108  Q
    ||||||||| ||| ||||||||||||| ||| || ||||||||||||||||| ||||||||    
T  44960564 cttttaatagtaaatttttatgaaaatttatgtaatcaatgcattgaaatttgtaatattt 44960504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 40852101 - 40852144
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcattgaaa 96  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  40852101 aatagtaagtttttatgaaaatatgtatattcaatgcattgaaa 40852144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 33364359 - 33364302
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||| ||||||||||||||||||| ||||| |||| ||| |||||| ||||||    
T  33364359 tattcaatgtattgaaatttataatatttaattttttaaaggaacaatttcaaaattt 33364302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 4384172 - 4384232
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagg 140  Q
    |||| ||||||||| || || ||||| |||||||| ||||||||||||| |||||||||||    
T  4384172 tattgaatgcattggaaattgtaatagttgattttttaaaagaataattactaaatttagg 4384232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 1369870 - 1369957
Alignment:
Q  55 taataagtttt-tatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    ||||||||||| ||||||||  ||| |||| ||||||||| || || | ||| |||| ||| ||||||||||||| ||||||||||||    
T  1369870 taataagttttatatgaaaagttatctattgaatgcattggaaattgtgatagttgactttttaaaagaataattgctaaatttagga 1369957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 10893475 - 10893525
Alignment:
Q  87 tgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||||||||||||||||||||| ||| | || ||||||||| |||||||    
T  10893475 tgcattgaaatttataatatttgactttttgaatgaataatttttaaattt 10893525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 27734360 - 27734434
Alignment:
Q  63 ttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||||||   | |||||||||||||| ||||| ||||||| || ||| | || |||||||||||||||||    
T  27734360 ttttatgaaaatccgtgtattcaatgcattggaatttgtaatattagactttttgaaggaataatttctaaattt 27734434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 27801268 - 27801322
Alignment:
Q  85 aatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    |||||||||||| || ||||| |||| ||| ||||||||||||| ||||||||||    
T  27801268 aatgcattgaaaattgtaatagttgactttttaaaagaataattactaaatttag 27801322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 32646909 - 32646840
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    ||||| ||||||||| ||||| || |||||||||| ||| ||| ||||||||| ||| |||||||||||||    
T  32646909 taagtatttatgaaa-tatatgtaatcaatgcattaaaaattaaaatatttgactttttaaaagaataatt 32646840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 167886 - 167938
Alignment:
Q  85 aatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||| || |||||||| |||| ||| |||||||||||||| |||||||    
T  167886 aatgcattggaaattataatagttgactttttaaaagaataatttttaaattt 167938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 11727910 - 11727993
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||||||| |||||||| | |||||| |||| ||||||| ||  | ||||||| ||| | |||||||||||||| |||||    
T  11727910 aataataagttttaatgaaaatttgtatatttaatgtattgaaaattgaagtatttgacttt-ttaaagaataatttcttaattt 11727993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 36819700 - 36819752
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||||| |||||||||||| | |||||||| ||| ||| |||||||||||||    
T  36819700 tttttataaaaatatatataattaatgcattaaaaattaaaatatttgatttt 36819752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 39691124 - 39691200
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataattt 129  Q
    |||| ||| ||||||||||||| | | ||||||||||||||||| ||  | ||||||| ||| | ||||||||||||    
T  39691124 aatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattt 39691200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 951 - 1030
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||||||||||| || | |||||||| |||||||| || ||||| |||| ||| |||||||| |||| ||||||||||||    
T  951 tttttatgaaaagatgtgtattcaatacattgaaaattgtaatagttgactttttaaaagaacaattgctaaatttagga 1030  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 15588746 - 15588667
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||||||||||  ||| || ||||||||||||||||| ||| |||| ||||| | |||||||| ||| |||||||    
T  15588746 taagtttttatgaaaaattatgtaatcaatgcattgaaatttgtaacatttaatttttttaaagaatattttataaattt 15588667  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 6555080 - 6555134
Alignment:
Q  85 aatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    ||||||||||||||||||| |||||| ||| | || ||||| |||||||||||||    
T  6555080 aatgcattgaaatttataacatttgacttttttaaggaatactttctaaatttag 6555134  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 4806511 - 4806568
Alignment:
Q  51 ttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatattt 108  Q
    |||||| ||||||||||||||||||| | || |||||| |||||||||| ||| ||||    
T  4806511 ttaatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaacattt 4806568  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 23399170 - 23399121
Alignment:
Q  89 cattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||| |||||||| || | ||| |||||||||||||||||||||||    
T  23399170 cattgaaaattataatagttaactttttaaaagaataatttctaaattta 23399121  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 9301999 - 9301919
Alignment:
Q  59 aagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttct-aaaagaataatttctaaattta 138  Q
    ||||||||||||||   | |||||||||||||||| || | |||||  |||||||| | |||||||||||| |||||||||    
T  9301999 aagtttttatgaaacgttgtatattcaatgcattggaaataataattgttgattttttaaaaagaataattactaaattta 9301919  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 30396334 - 30396282
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||| ||||||| ||| || |||||||||||||| || ||||||||||||||    
T  30396334 tttttttgaaaatttatgtaatcaatgcattgaaaattgtaatatttgatttt 30396282  T

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