View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21435_high_17 (Length: 295)

Name: NF21435_high_17
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21435_high_17
NF21435_high_17
[»] chr1 (25 HSPs)
chr1 (1-285)||(35147256-35147540)
chr1 (69-285)||(35190332-35190548)
chr1 (71-281)||(35199894-35200113)
chr1 (72-285)||(35262974-35263196)
chr1 (72-274)||(35270397-35270610)
chr1 (82-273)||(35224886-35225086)
chr1 (72-278)||(35276503-35276712)
chr1 (88-285)||(35208121-35208318)
chr1 (175-285)||(45525539-45525649)
chr1 (102-247)||(35215977-35216122)
chr1 (73-150)||(35248234-35248311)
chr1 (165-276)||(35295848-35295962)
chr1 (200-277)||(35248367-35248447)
chr1 (72-162)||(35219026-35219114)
chr1 (215-276)||(34309464-34309525)
chr1 (215-266)||(35212081-35212132)
chr1 (215-266)||(35476417-35476468)
chr1 (215-257)||(35194608-35194650)
chr1 (69-147)||(35476263-35476340)
chr1 (111-273)||(8638900-8639074)
chr1 (215-275)||(35189426-35189486)
chr1 (222-265)||(35205031-35205074)
chr1 (96-147)||(45525454-45525505)
chr1 (84-147)||(45531543-45531606)
chr1 (215-267)||(35219179-35219231)
[»] chr3 (7 HSPs)
chr3 (222-272)||(23331914-23331964)
chr3 (222-275)||(17664560-17664613)
chr3 (222-275)||(19246963-19247016)
chr3 (216-276)||(899745-899805)
chr3 (216-260)||(53924271-53924315)
chr3 (111-147)||(53924390-53924426)
chr3 (82-147)||(899886-899951)
[»] chr2 (2 HSPs)
chr2 (222-275)||(33138612-33138665)
chr2 (226-278)||(18558741-18558792)
[»] chr7 (2 HSPs)
chr7 (215-275)||(38631999-38632059)
chr7 (72-147)||(38631849-38631922)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 35147256 - 35147540
Alignment:
Q  1 aaacagtttggaacaaaaatatgtgtaagatagtaggttgaaaattctcaaacatgttctgccaccaaacgcaagaccccttgcatagttcatggaatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35147256 aaacagtttggaacaaaaatatgtgtaagatagtaggttgaaaattctcaaacatgttctgccaccaaacgcaagaccccttgcatagttcatggaatgt 35147355  T
Q  101 tgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaattatttgtctccttaacattcatcaggacgtctccatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35147356 tgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaattatttgtctccttaacattcatcaggacgtctccatct 35147455  T
Q  201 tctaggcctgaattgaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcctactgctctgt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35147456 tctaggcctgaattgaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcctactgctctgt 35147540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 69 - 285
Target Start/End: Original strand, 35190332 - 35190548
Alignment:
Q  69 acgcaagaccccttgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaattatttg 168  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  35190332 acgcaagaccccttgcatagttcacggaatgttgctgaatggtcttacttaggcctaacttctattccttcaagaaagagacctctcttccaattatttg 35190431  T
Q  169 tctccttaacattcatcaggacgtctccatcttctaggcctgaatt---gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacg 265  Q
    ||||||||||||||||  |||   || |||||||||||||||||||   |||||| || ||||||||||||||||||||||| |||||||||||||||||    
T  35190432 tctccttaacattcatttgga---cttcatcttctaggcctgaattgaagaactctccgatctcaatctccaaccacccatcacttctcacactaggacg 35190528  T
Q  266 ttgcaatcctactgctctgt 285  Q
    ||||||||||||||||||||    
T  35190529 ttgcaatcctactgctctgt 35190548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 71 - 281
Target Start/End: Original strand, 35199894 - 35200113
Alignment:
Q  71 gcaagaccccttgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaatt------a 164  Q
    |||||||||||| |||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||      |    
T  35199894 gcaagacccctttcatagttcatggaatgttacttaattgtcttacttaggcctgacttctattccttcaagaaagagaccactcttcgaattataatca 35199993  T
Q  165 tttgtctccttaacattcatcaggacgtctccatcttctaggcctgaatt---gaactcccccatctcaatctccaaccacccatcgcttctcacactag 261  Q
    | ||||||||| | ||||||  | || ||| ||||||||  |||||||||   ||||||||| || ||||||||||||||||||||||||||||||||||    
T  35199994 tctgtctcctttatattcatttgaacttcttcatcttcttcgcctgaattgaagaactccccgatttcaatctccaaccacccatcgcttctcacactag 35200093  T
Q  262 gacgttgcaatcctactgct 281  Q
    | ||||||||||||||||||    
T  35200094 ggcgttgcaatcctactgct 35200113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 72 - 285
Target Start/End: Original strand, 35262974 - 35263196
Alignment:
Q  72 caagaccccttgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaatta------t 165  Q
    ||||||||||||||||||  |   |||| |||||||| || ||| |||||||||| |||||||||||||| ||||||||||||||||||||||      |    
T  35262974 caagaccccttgcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaattaccagcct 35263073  T
Q  166 ttgtctccttaacattcatcaggacgtctccatcttctaggcctgaattgaa---ctcccccatctcaatctccaaccacccatcgcttctcacactagg 262  Q
    || ||||    | ||||||| |||| ||| ||| ||||| ||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  35263074 ttatctctaacaaattcatctggacttcttcattttctatgcctgaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacactagg 35263173  T
Q  263 acgttgcaatcctactgctctgt 285  Q
    |||||||||||||||||||||||    
T  35263174 acgttgcaatcctactgctctgt 35263196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 274
Target Start/End: Original strand, 35270397 - 35270610
Alignment:
Q  72 caagaccccttgcatagttcatggaatgttgcttaatggtctta--cttaggcctaacttctattccttcaacaaagagaccactcttccaatta----- 164  Q
    |||||||||||||||||||||  |||||||| ||||| || |||  |||||||||||||||||||||||||| ||  ||||| ||||||||||||         
T  35270397 caagaccccttgcatagttcagtgaatgttggttaattgtgttatacttaggcctaacttctattccttcaagaactagacctctcttccaattaccacc 35270496  T
Q  165 -tttgtctccttaacattcatcaggacgtctccatcttctaggcctgaattgaa---ctcccccatctcaatctccaaccacccatcgcttctcacacta 260  Q
     |||||||   | ||||||||| |||| ||| ||| ||||| ||||||||||||   |||||||||||||||||||||||||||||| ||||||||||||    
T  35270497 ctttgtctgtatcacattcatctggacttcttcattttctatgcctgaattgaagaactcccccatctcaatctccaaccacccatcacttctcacacta 35270596  T
Q  261 ggacgttgcaatcc 274  Q
    ||||||||||||||    
T  35270597 ggacgttgcaatcc 35270610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 35224886 - 35225086
Alignment:
Q  82 tgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaatta------tttgtctcctt 175  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |      ||| | ||  |    
T  35224886 tgcatagttcatggaatgttgcctaatggtcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaatgaccaccctttatatcaat 35224985  T
Q  176 aacattcatcaggacgtctccatcttctaggcctgaatt---gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaat 272  Q
    |||| ||||  |||| ||| ||||||||||||||||| |   |||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||    
T  35224986 aacactcatttggacttcttcatcttctaggcctgaaatgaagaactctcccatctcaatctctaaccagccatcgcttctcacattaggacgttgcaat 35225085  T
Q  273 c 273  Q
    |    
T  35225086 c 35225086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 278
Target Start/End: Original strand, 35276503 - 35276712
Alignment:
Q  72 caagaccccttgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaatta---tttg 168  Q
    |||||||| |||||||| |||  ||||  ||||||||||| |||||||||||||| || ||| ||||||| |||||||||||||||||||  |   |||     
T  35276503 caagacccgttgcatagctcagtgaattctgcttaatggtgttacttaggcctaatttatatcccttcaagaaagagaccactcttccaaccacccttta 35276602  T
Q  169 tctccttaacattcatcaggacgtctccatcttctaggcctgaattgaa---ctcccccatctcaatctccaaccacccatcgcttctcacactaggacg 265  Q
    ||||| | ||||||||| | || ||| ||  ||    ||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||    
T  35276603 tctccatcacattcatctgaacttcttcacattt---gcctgaattgaagaactcccccatctcaatctccaaccacccatctcttctcacactaggacg 35276699  T
Q  266 ttgcaatcctact 278  Q
    |||||||||||||    
T  35276700 ttgcaatcctact 35276712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 88 - 285
Target Start/End: Original strand, 35208121 - 35208318
Alignment:
Q  88 gttcatggaatgttgcttaatggtcttacttaggcctaacttctatt---ccttcaacaaagagaccactcttccaattatttgtctccttaacattcat 184  Q
    ||||| ||||||||||||||||||||||    |||||||||||||||   ||||| | |||||||||  ||||||||| |||||||||||||||||||||    
T  35208121 gttcacggaatgttgcttaatggtctta----ggcctaacttctattattccttctagaaagagacctttcttccaataatttgtctccttaacattcat 35208216  T
Q  185 caggacgtctccatcttctaggcc-tgaattgaa---ctcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcctactgc 280  Q
    | |||| |||   ||||||||||| |||||||||   |||||| ||||||||||||||||||||||||||||||||  |||| |||||  || ||||| |    
T  35208217 ctggacttct---tcttctaggccatgaattgaagaactccccaatctcaatctccaaccacccatcgcttctcacgttagggcgttgtgatactactac 35208313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 45525539 - 45525649
Alignment:
Q  175 taacattcatcaggacgtctccatcttctaggcctgaattgaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcc 274  Q
    ||||| ||||| |||| ||| ||| ||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||  |||||||    
T  45525539 taacactcatctggacttcttcattttcaaggcctgaattgaactctcccatctcaatctccaaccacccatcacttctcacaccaggacgcggcaatcc 45525638  T
Q  275 tactgctctgt 285  Q
    |||| ||||||    
T  45525639 tactactctgt 45525649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 102 - 247
Target Start/End: Original strand, 35215977 - 35216122
Alignment:
Q  102 gcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaattatttgtctccttaacattcatcaggacgtctccatctt 201  Q
    ||||| |||||||||||||||||||||||||||||| |||  |||||| |  ||||||||| || | ||| |||||||||||||||||| ||   |||||    
T  35215977 gcttactggtcttacttaggcctaacttctattcctgcaagcaagagatctttcttccaataatctctctgcttaacattcatcaggacttc---atctt 35216073  T
Q  202 ctaggcctgaattgaa---ctcccccatctcaatctccaaccacccatc 247  Q
    || |||||||||||||   ||| |  |||||||||||||||||||||||    
T  35216074 cttggcctgaattgaagaactctctgatctcaatctccaaccacccatc 35216122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 35248234 - 35248311
Alignment:
Q  73 aagaccccttgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagac 150  Q
    ||||||||||||||||||||  |||||||||||||| || ||||||||| |||||||||||||||||||  |||||||    
T  35248234 aagaccccttgcatagttcagtgaatgttgcttaattgtattacttaggtctaacttctattccttcaaataagagac 35248311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 276
Target Start/End: Complemental strand, 35295962 - 35295848
Alignment:
Q  165 tttgtctccttaacattcatcaggacgtctccatcttctaggcctgaattgaa---ctcccccatctcaatctccaaccacccatcgcttctcacactag 261  Q
    ||||| ||| ||||| ||||  |||| ||| ||||| ||| ||||||||||||   ||| |||||||||||||||||||||||||| |||||||||||||    
T  35295962 tttgtatccataacactcatttggacttcttcatctactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactag 35295863  T
Q  262 gacgttgcaatccta 276  Q
    |  ||||||||||||    
T  35295862 gctgttgcaatccta 35295848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 35248367 - 35248447
Alignment:
Q  200 ttctaggcctgaattgaa---ctcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcctac 277  Q
    |||||||||| |||||||   |||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||||||    
T  35248367 ttctaggcctaaattgaagaactcccccatctcaatctcaaaccacccatcgcttctcacaatagaactttgcaatcctac 35248447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 35219026 - 35219114
Alignment:
Q  72 caagaccccttgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaat 162  Q
    |||||||||| ||||||||||  | |||||| ||| || |||| |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  35219026 caagacccct-gcatagttcagtgtatgttgtttattg-tcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaat 35219114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 34309464 - 34309525
Alignment:
Q  215 gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatccta 276  Q
    |||||| |||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||    
T  34309464 gaactctcccatctcaatctccaaccatccatcacttcttacattaggacgttgcaatccta 34309525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 35212081 - 35212132
Alignment:
Q  215 gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgt 266  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||||    
T  35212081 gaactctcccatctcaatctccaaccacccatcacttctcacactcggacgt 35212132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 35476417 - 35476468
Alignment:
Q  215 gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgt 266  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||||||    
T  35476417 gaactctcccatctcaatctccaaccacccatcacgtctcacactaggacgt 35476468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 35194608 - 35194650
Alignment:
Q  215 gaactcccccatctcaatctccaaccacccatcgcttctcaca 257  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  35194608 gaactcccccatttcaatctccaaccacccatcgcttctcaca 35194650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 35476263 - 35476340
Alignment:
Q  69 acgcaagaccccttgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaaga 147  Q
    |||||||||||||  |||| ||||  |||||||||||||| ||||| |||||| ||||||||||||||||||| |||||    
T  35476263 acgcaagaccccta-cataattcagtgaatgttgcttaattgtcttccttaggtctaacttctattccttcaagaaaga 35476340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 273
Target Start/End: Original strand, 8638900 - 8639074
Alignment:
Q  111 tcttacttaggcctaacttctattccttcaacaaagagaccactcttccaattat---------ttgtctccttaacattcatcaggacgtctccatctt 201  Q
    |||| ||| |||||||||||||||||||||||||||| ||| ||||||||| |||         || || |  ||| | ||||  |||| ||| ||||||    
T  8638900 tcttccttgggcctaacttctattccttcaacaaagaaacctctcttccaagtataaccatcctttatcccagtaatactcatttggacttcttcatctt 8638999  T
Q  202 ctaggcctgaattgaa---ctcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatc 273  Q
    ||| ||||||||||||   ||| ||||||||| |||||||||||||||| |||||||  |||||  |||||||||    
T  8639000 ctaagcctgaattgaagaactctcccatctcagtctccaaccacccatcacttctcattctaggttgttgcaatc 8639074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 35189426 - 35189486
Alignment:
Q  215 gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcct 275  Q
    ||||||||||||  ||||||||||||||| ||| |||||||||| ||||| ||||||||||    
T  35189426 gaactcccccattccaatctccaaccacctatcacttctcacacaaggacattgcaatcct 35189486  T

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Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 35205031 - 35205074
Alignment:
Q  222 cccatctcaatctccaaccacccatcgcttctcacactaggacg 265  Q
    |||||||||||||||||||||||||| ||||||||| |||||||    
T  35205031 cccatctcaatctccaaccacccatcacttctcacattaggacg 35205074  T

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Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 45525454 - 45525505
Alignment:
Q  96 aatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaaga 147  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||| |||||    
T  45525454 aatgttgcttaattgtctaccttaggcctaacttctattccttcaagaaaga 45525505  T

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Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 45531543 - 45531606
Alignment:
Q  84 catagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaaga 147  Q
    |||||||||  ||| |||||||||| ||||  |||||||||||||||||||||||||| |||||    
T  45531543 catagttcactgaaagttgcttaattgtctaccttaggcctaacttctattccttcaagaaaga 45531606  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 35219179 - 35219231
Alignment:
Q  215 gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgtt 267  Q
    |||||| ||||||||| | ||||||||| |||| ||||||| |||||||||||    
T  35219179 gaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtt 35219231  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 23331914 - 23331964
Alignment:
Q  222 cccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaat 272  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  23331914 cccatctcaatctccaaccacccatcgcttctcacattaggacgatgcaat 23331964  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 17664613 - 17664560
Alignment:
Q  222 cccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcct 275  Q
    |||||||||||||||||||| ||||| | ||| |||||||||||||||||||||    
T  17664613 cccatctcaatctccaaccatccatcacatctaacactaggacgttgcaatcct 17664560  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 19247016 - 19246963
Alignment:
Q  222 cccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcct 275  Q
    |||||||||||||||||||| ||||| | ||| |||||||||||||||||||||    
T  19247016 cccatctcaatctccaaccatccatcacatctaacactaggacgttgcaatcct 19246963  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 899805 - 899745
Alignment:
Q  216 aactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatccta 276  Q
    ||||| ||||||||||||||||||||||||||||||||||   |||| || ||||||||||    
T  899805 aactctcccatctcaatctccaaccacccatcgcttctcatggtagggcgctgcaatccta 899745  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 53924315 - 53924271
Alignment:
Q  216 aactcccccatctcaatctccaaccacccatcgcttctcacacta 260  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  53924315 aactcccccatctcaatctccaaccacccatcgctcctcaaacta 53924271  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 53924426 - 53924390
Alignment:
Q  111 tcttacttaggcctaacttctattccttcaacaaaga 147  Q
    ||||||||||||||||||||||||||||||| |||||    
T  53924426 tcttacttaggcctaacttctattccttcaagaaaga 53924390  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 899951 - 899886
Alignment:
Q  82 tgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaaga 147  Q
    |||||| ||||  |||| |||||||||  || | |||||||||||||||||||||||||| |||||    
T  899951 tgcataattcaatgaatattgcttaattttcctccttaggcctaacttctattccttcaagaaaga 899886  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 33138665 - 33138612
Alignment:
Q  222 cccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcct 275  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  33138665 cccatctcaatctccaaccacccatcacttctcacagtaggacgctgcaatcct 33138612  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 18558792 - 18558741
Alignment:
Q  226 tctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcctact 278  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||||||||    
T  18558792 tctcaatctccaaccacccatcacgtctcacactaggac-ttgcaatcctact 18558741  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 38631999 - 38632059
Alignment:
Q  215 gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgttgcaatcct 275  Q
    |||||| ||||| | ||||||||||||||||||| |||| ||||||| |||| ||||||||    
T  38631999 gaactctcccatatgaatctccaaccacccatcgtttcttacactagcacgtcgcaatcct 38632059  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 38631849 - 38631922
Alignment:
Q  72 caagaccccttgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaaga 147  Q
    |||||||||||||||| ||||   ||||||||| ||| ||||| ||| | ||||||||||||||||||||||||||    
T  38631849 caagaccccttgcata-ttcagtcaatgttgctaaattgtctt-ctttgtcctaacttctattccttcaacaaaga 38631922  T

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