View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21435_high_21 (Length: 253)

Name: NF21435_high_21
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21435_high_21
NF21435_high_21
[»] chr7 (6 HSPs)
chr7 (1-139)||(3034597-3034735)
chr7 (43-139)||(3009603-3009699)
chr7 (44-139)||(3019559-3019654)
chr7 (192-235)||(3034788-3034831)
chr7 (193-230)||(3019708-3019745)
chr7 (192-235)||(3009754-3009797)
[»] chr2 (2 HSPs)
chr2 (1-139)||(20059527-20059665)
chr2 (192-235)||(20059430-20059473)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 3034597 - 3034735
Alignment:
Q  1 ataataagtggaaaaaaggtaagagaattgcaaccaaaaaggtaacctcatccgagcttccaacataggaactgtccaccatctttaagtaatcttttga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3034597 ataataagtggaaaaaaggtaagagaattgcaaccaaaaaggtaacctcatctgagcttccaacataggaactgtccaccatctttaagtaatcttttga 3034696  T
Q  101 tgcgttccttgaagaaacctgtaacggtttattagttag 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3034697 tgcgttccttgaagaaacctgtaacggtttattagttag 3034735  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 3009603 - 3009699
Alignment:
Q  43 taacctcatccgagcttccaacataggaactgtccaccatctttaagtaatcttttgatgcgttccttgaagaaacctgtaacggtttattagttag 139  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||   |||||||||||||||||||||||    
T  3009603 taacctcatctgagctgccaacataggaactgtccaccatctttaagtaatcttttgctgcattccttgaactgacctgtaacggtttattagttag 3009699  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 3019559 - 3019654
Alignment:
Q  44 aacctcatccgagcttccaacataggaactgtccaccatctttaagtaatcttttgatgcgttccttgaagaaacctgtaacggtttattagttag 139  Q
    ||||||||| |||||||||||||| ||||| |||||| | |||||||||||||||||||| |||||||||   |||||||| |||||| |||||||    
T  3019559 aacctcatctgagcttccaacatatgaactatccaccgtatttaagtaatcttttgatgcattccttgaactgacctgtaatggtttaatagttag 3019654  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 3034788 - 3034831
Alignment:
Q  192 ggataccttatcatacttcttcatgatttttgagaatgccaata 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3034788 ggataccttatcatacttcttcatgatttttgagaatgccaata 3034831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 3019708 - 3019745
Alignment:
Q  193 gataccttatcatacttcttcatgatttttgagaatgc 230  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3019708 gataccttatcatacttcttcatgatttttgagaatgc 3019745  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 3009754 - 3009797
Alignment:
Q  192 ggataccttatcatacttcttcatgatttttgagaatgccaata 235  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||    
T  3009754 ggataccttatcatacttcttcaagatttttgagattcccaata 3009797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 20059665 - 20059527
Alignment:
Q  1 ataataagtggaaaaaaggtaagagaattgcaaccaaaaaggtaacctcatccgagcttccaacataggaactgtccaccatctttaagtaatcttttga 100  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  20059665 ataattagtgcaaaaaaggtaagagagttgcaaccaaaaaggtaacctcatctgagctgccaacataggaactgtccaccatctttaagtaatcttttga 20059566  T
Q  101 tgcgttccttgaagaaacctgtaacggtttattagttag 139  Q
    ||| ||||||||||  |||||||| ||||||||||||||    
T  20059565 tgcattccttgaagtgacctgtaaaggtttattagttag 20059527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 20059473 - 20059430
Alignment:
Q  192 ggataccttatcatacttcttcatgatttttgagaatgccaata 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20059473 ggataccttatcatacttcttcatgatttttgagaatgccaata 20059430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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