View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_high_26 (Length: 250)
Name: NF21435_high_26
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 14913290 - 14913365
Alignment:
| Q |
15 |
ggatagggtggagaaagtaaaagtcaacgatttatgggcttgaatccattatccattatcaataagcccattgaac |
90 |
Q |
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| T |
14913290 |
ggatagggtggagaaagtaaaagtcaacgatttatgggcttgaatccattatccattatcaataagcccattgaac |
14913365 |
T |
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 14913431 - 14913523
Alignment:
| Q |
158 |
tatatagatgttagataatcaggtcaccggcaacctgagcttcatcaaatcatcctccg-accacacctgttcttcagctactccccaactccc |
250 |
Q |
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| T |
14913431 |
tatatagatgttagataatc-ggtcaccggcaacctgagcttcatcaaatcatctgccgtgccacacctgttcttcagctactccccaactccc |
14913523 |
T |
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