View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21435_high_30 (Length: 246)

Name: NF21435_high_30
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21435_high_30
NF21435_high_30
[»] chr3 (9 HSPs)
chr3 (2-218)||(23036439-23036655)
chr3 (3-218)||(23039311-23039530)
chr3 (3-159)||(23024542-23024698)
chr3 (3-217)||(23146190-23146404)
chr3 (25-191)||(23032991-23033157)
chr3 (2-176)||(23140315-23140489)
chr3 (3-159)||(23149028-23149184)
chr3 (21-169)||(23017350-23017498)
chr3 (42-146)||(22832145-22832249)
[»] chr6 (1 HSPs)
chr6 (3-166)||(21780083-21780246)
[»] scaffold0554 (1 HSPs)
scaffold0554 (39-170)||(6317-6448)
[»] scaffold0059 (1 HSPs)
scaffold0059 (45-161)||(62465-62581)
[»] chr1 (3 HSPs)
chr1 (59-161)||(12637324-12637426)
chr1 (45-164)||(15885531-15885650)
chr1 (6-147)||(12610178-12610319)
[»] chr8 (2 HSPs)
chr8 (54-111)||(23610538-23610595)
chr8 (42-146)||(5593816-5593920)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 23036439 - 23036655
Alignment:
Q  2 gttgatacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgcc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036439 gttgatacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgcc 23036538  T
Q  102 attgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaaaagtagctatcagtaagttcaagcaaatccaagaatgtttaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23036539 attgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaaaagtagctatcagtaagttcaagcaaatccaagaatctttaa 23036638  T
Q  202 ggcgatatataaaaaga 218  Q
    |||||||||||||||||    
T  23036639 ggcgatatataaaaaga 23036655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 23039311 - 23039530
Alignment:
Q  3 ttgatacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgcca 102  Q
    ||||| ||||| || || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||||||| |||    
T  23039311 ttgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatcccttatcatttctacca 23039410  T
Q  103 ttgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaaaagtagctatcagtaagttcaagca----aatccaagaatgtt 198  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||    |||||||||||||     
T  23039411 ttgcccagtctatggtgcttgctgatgtctcacctccagcaccaaaaacgtcctgaaaagtagctatcaataaggtcaagcaagctaatccaagaatgtc 23039510  T
Q  199 taaggcgatatataaaaaga 218  Q
    ||| | ||||||||||||||    
T  23039511 taaagtgatatataaaaaga 23039530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 23024542 - 23024698
Alignment:
Q  3 ttgatacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgcca 102  Q
    ||||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23024542 ttgatacaattctcttcaacccttcctttcatattgaaaatctctcgcacctcagcttgtgctttcttcattattcttggattctttaccatttctgcca 23024641  T
Q  103 ttgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaa 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23024642 ttgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaa 23024698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 23146190 - 23146404
Alignment:
Q  3 ttgatacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgcca 102  Q
    ||||| ||||| || || |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | |||||| |||| |||    
T  23146190 ttgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaattctacca 23146289  T
Q  103 ttgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaaaagtagctatcagtaagttcaagcaaatccaagaatgtttaag 202  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| | |||| ||||||||||||| | |     
T  23146290 ttgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgtaaagtagctatcaataaggttaagctaatccaagaatgtcttaa 23146389  T
Q  203 gcgatatataaaaag 217  Q
    | |||||||||||||    
T  23146390 gtgatatataaaaag 23146404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 23032991 - 23033157
Alignment:
Q  25 ttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||  |||| |||||||| ||| ||||||||||||||||||||    
T  23032991 ttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgc 23033090  T
Q  125 tgatgtctcacctccagcaccaaaaatgtcctgaaaagtagctatcagtaagttcaagcaaatccaa 191  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  23033091 tgatgtctcgcctccagcaccaaaaatgtcctgaaaagtagctatcaataaggtcaaccaaatccaa 23033157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 23140315 - 23140489
Alignment:
Q  2 gttgatacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgcc 101  Q
    |||||| ||||| || || |||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||| ||||| ||||||| ||    
T  23140315 gttgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcactttcttcattattcttggatcccttatcatttctacc 23140414  T
Q  102 attgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaaaagtagctatcagtaag 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||    
T  23140415 attgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaacaataactatcactaag 23140489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 23149028 - 23149184
Alignment:
Q  3 ttgatacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgcca 102  Q
    ||||| ||||| || || ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||| ||| |||    
T  23149028 ttgatgcaattttcatcaacctttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctacca 23149127  T
Q  103 ttgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaa 159  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23149128 ttgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaaatgtcctgaa 23149184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 23017350 - 23017498
Alignment:
Q  21 acccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgc 120  Q
    |||| |||||||||||| | ||| || ||||| ||| ||||||||||||||||||||||||||||||||| |||||||  ||||||||||||| ||||||    
T  23017350 acccgtcctttcatttttataacatccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctgtggtgc 23017449  T
Q  121 ttgctgatgtctcacctccagcaccaaaaatgtcctgaaaagtagctat 169  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  23017450 ttgctgatgtctcacctccaccaccgaaaatgtcctgaaaagtagctat 23017498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 22832145 - 22832249
Alignment:
Q  42 acctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccag 141  Q
    |||||||| |||||||||||| |||||| ||||||| | |||||  | | ||| |||||||| |||||   ||||||  | ||||||||||||| ||||     
T  22832145 acctctcttacctcagcttgtactttctccattattttgggatttttaatcatctctgccatcgcccatgttatggttgtagctgatgtctcacttccac 22832244  T
Q  142 cacca 146  Q
    |||||    
T  22832245 cacca 22832249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 21780083 - 21780246
Alignment:
Q  3 ttgatacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgcca 102  Q
    ||||| ||||| || || ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||    
T  21780083 ttgatgcaattttcatcaacccttcctttcattttgaaaacttctctcacttcatcttgtgctttcttcattattcttggatcccttaccatttctacca 21780182  T
Q  103 ttgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaaaagtagc 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21780183 ttgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaagtagc 21780246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 6448 - 6317
Alignment:
Q  39 aaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctc 138  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||||||| |||||||    
T  6448 aaaacttctcgcacctcagcttgtgctttcatcattattcttggctcccttatcatttctgccattgcccaatctatggtggttgctgatgtatcacctc 6349  T
Q  139 cagcaccaaaaatgtcctgaaaagtagctatc 170  Q
    |||||||||||||||||| |||||||||||||    
T  6348 cagcaccaaaaatgtcctaaaaagtagctatc 6317  T

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Target: scaffold0059 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 62465 - 62581
Alignment:
Q  45 tctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcac 144  Q
    |||||||| ||| |||||||||||||||| | ||||||||  |||||||  ||||||||||||||| ||| | |    |||||||| |||||||||||||    
T  62465 tctctcacttcatcttgtgctttcttcatcactcttggatctcttaccaactctgccattgcccaaactacgctcaaagctgatgtatcacctccagcac 62564  T
Q  145 caaaaatgtcctgaaaa 161  Q
    |||| ||||||||||||    
T  62565 caaacatgtcctgaaaa 62581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 12637324 - 12637426
Alignment:
Q  59 ttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctga 158  Q
    ||||||||||||||| | |||||||| |||||| |  ||||||||||||||| |||||||  | | |||||| ||||||||||||||||  |||||||||    
T  12637324 ttgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatgatgtcctga 12637423  T
Q  159 aaa 161  Q
    |||    
T  12637424 aaa 12637426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 15885650 - 15885531
Alignment:
Q  45 tctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcac 144  Q
    ||||| || ||| |||||||||||||||| | ||||  || ||||||||  ||||||||||||||| |||||||| |    ||||| || ||||||||||    
T  15885650 tctcttacttcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcac 15885551  T
Q  145 caaaaatgtcctgaaaagta 164  Q
    |||| |||||||||||||||    
T  15885550 caaacatgtcctgaaaagta 15885531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 12610178 - 12610319
Alignment:
Q  6 atacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattg 105  Q
    |||||||| ||||| ||  |||||||||| ||||| |  ||||| |||||| |||||||||||||||| | ||||  || ||||||||  |||| |||||    
T  12610178 atacaattttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacattg 12610277  T
Q  106 cccaatctatggtgcttgctgatgtctcacctccagcaccaa 147  Q
    ||||| |||| ||    |||||||| ||||||||||||||||    
T  12610278 cccaaactatagtagaagctgatgtatcacctccagcaccaa 12610319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 23610538 - 23610595
Alignment:
Q  54 tcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaat 111  Q
    |||||||||||||||||||  |||||||||| | ||| ||| || |||||||||||||    
T  23610538 tcagcttgtgctttcttcaaaattcttggatcctttatcatctcagccattgcccaat 23610595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 5593920 - 5593816
Alignment:
Q  42 acctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccag 141  Q
    |||||||| |||||||||||| |||||| ||||||| | |||||  | | ||| |||||||| |||||   ||||||  | ||||||||||||| ||||     
T  5593920 acctctcttacctcagcttgtactttctccattattttgggatttttaatcatctctgccatcgcccatgttatggttgtagctgatgtctcacttccac 5593821  T
Q  142 cacca 146  Q
    |||||    
T  5593820 cacca 5593816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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