View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21435_high_34 (Length: 237)
Name: NF21435_high_34
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6698259 - 6698480
Alignment:
| Q |
1 |
taaacattgatgaagatatgattcttcaacgatgttatgcccttagaagtgtctcttcaacatggtggataggtggagaaaatgtttcagcttttgcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6698259 |
taaacattgatgaagatatgattcttcaacgatgttatgcccttagaagtgtctcttcaacatggcggataggtggagaaaatgtttcagcttttgcatt |
6698358 |
T |
|
| Q |
101 |
tgcaccaacaccaacatgattacttggataacaagctttacaaagctcattatacctatttgcatcaaagttgtatgccttcataagacgctcttgttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6698359 |
tgcaccaacaccaacatgattacttggataacaagctttgcaaagctcattatacctatttgcatcaaagttgtatgtcttcataagacgctcttgttta |
6698458 |
T |
|
| Q |
201 |
gccatgaaacgacgatggaaat |
222 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
6698459 |
gacatgaaacgacgatggaaat |
6698480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University