View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21435_low_1 (Length: 784)

Name: NF21435_low_1
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21435_low_1
NF21435_low_1
[»] chr6 (8 HSPs)
chr6 (436-762)||(24326786-24327101)
chr6 (605-655)||(17436569-17436619)
chr6 (605-655)||(31522563-31522613)
chr6 (605-654)||(32275800-32275849)
chr6 (605-653)||(32274184-32274232)
chr6 (605-652)||(807200-807247)
chr6 (605-655)||(14153354-14153404)
chr6 (605-650)||(17436036-17436081)
[»] chr8 (11 HSPs)
chr8 (605-762)||(9418587-9418744)
chr8 (605-653)||(5967267-5967315)
chr8 (605-651)||(31762241-31762287)
chr8 (605-739)||(9387874-9388008)
chr8 (603-651)||(33228166-33228214)
chr8 (605-650)||(33220820-33220865)
chr8 (605-653)||(34279591-34279639)
chr8 (605-653)||(43641003-43641051)
chr8 (605-652)||(33220024-33220070)
chr8 (605-655)||(3588340-3588390)
chr8 (605-650)||(23559016-23559061)
[»] chr4 (15 HSPs)
chr4 (605-728)||(37577195-37577318)
chr4 (605-728)||(628088-628211)
chr4 (608-655)||(24974174-24974221)
chr4 (606-655)||(27992116-27992165)
chr4 (608-653)||(36501895-36501940)
chr4 (611-739)||(40923838-40923966)
chr4 (603-653)||(54208178-54208228)
chr4 (605-655)||(55527941-55527991)
chr4 (611-651)||(55312075-55312115)
chr4 (605-652)||(33164536-33164583)
chr4 (605-668)||(37030909-37030972)
chr4 (605-655)||(34235732-34235782)
chr4 (605-683)||(37576543-37576621)
chr4 (597-651)||(45237403-45237457)
chr4 (605-651)||(51719806-51719852)
[»] scaffold0041 (1 HSPs)
scaffold0041 (605-739)||(23487-23621)
[»] chr3 (13 HSPs)
chr3 (605-739)||(44430418-44430552)
chr3 (622-728)||(50664140-50664246)
chr3 (605-654)||(15040681-15040730)
chr3 (605-653)||(53814591-53814639)
chr3 (606-667)||(13843609-13843670)
chr3 (605-655)||(35069474-35069524)
chr3 (605-650)||(4969875-4969920)
chr3 (605-650)||(6162715-6162760)
chr3 (611-655)||(7665739-7665783)
chr3 (605-653)||(39645774-39645822)
chr3 (605-668)||(3860246-3860309)
chr3 (605-655)||(40517551-40517601)
chr3 (605-654)||(53824291-53824339)
[»] chr7 (13 HSPs)
chr7 (605-734)||(44552026-44552155)
chr7 (608-655)||(5200-5247)
chr7 (605-654)||(33839471-33839520)
chr7 (609-653)||(38386178-38386222)
chr7 (604-655)||(19365423-19365474)
chr7 (605-650)||(5060848-5060893)
chr7 (603-652)||(10527015-10527064)
chr7 (605-653)||(5061758-5061806)
chr7 (605-655)||(28138759-28138809)
chr7 (605-655)||(28139463-28139513)
chr7 (605-639)||(38790884-38790918)
chr7 (605-650)||(20379701-20379746)
chr7 (605-650)||(42548161-42548206)
[»] chr2 (9 HSPs)
chr2 (603-655)||(8273243-8273295)
chr2 (609-739)||(25678832-25678962)
chr2 (605-739)||(943188-943321)
chr2 (603-655)||(22788013-22788065)
chr2 (605-733)||(24929283-24929411)
chr2 (605-650)||(37893041-37893086)
chr2 (605-655)||(25389878-25389928)
chr2 (605-650)||(20685006-20685051)
chr2 (611-652)||(38147103-38147144)
[»] chr5 (16 HSPs)
chr5 (603-654)||(34016000-34016051)
chr5 (605-655)||(28677886-28677936)
chr5 (604-693)||(36933212-36933301)
chr5 (603-655)||(759158-759210)
chr5 (611-654)||(6706064-6706107)
chr5 (633-734)||(34924083-34924184)
chr5 (605-653)||(17636344-17636392)
chr5 (605-652)||(6158973-6159020)
chr5 (605-652)||(17644631-17644678)
chr5 (605-655)||(1145141-1145191)
chr5 (608-653)||(5506721-5506766)
chr5 (609-650)||(30491828-30491869)
chr5 (605-655)||(40266616-40266667)
chr5 (605-655)||(6636930-6636980)
chr5 (605-655)||(25759840-25759890)
chr5 (264-317)||(34692372-34692425)
[»] chr1 (20 HSPs)
chr1 (605-654)||(28446559-28446608)
chr1 (605-655)||(5602944-5602994)
chr1 (605-655)||(33617644-33617694)
chr1 (605-650)||(11821160-11821205)
chr1 (605-654)||(28474792-28474841)
chr1 (389-464)||(43294969-43295044)
chr1 (605-652)||(49033761-49033808)
chr1 (605-655)||(33401408-33401458)
chr1 (605-655)||(50065478-50065528)
chr1 (605-653)||(28476012-28476060)
chr1 (605-654)||(35563364-35563409)
chr1 (605-652)||(39650196-39650243)
chr1 (605-767)||(49030232-49030395)
chr1 (604-650)||(45691081-45691127)
chr1 (604-650)||(45691223-45691269)
chr1 (604-650)||(45691365-45691411)
chr1 (605-650)||(3792487-3792532)
chr1 (605-650)||(3792560-3792605)
chr1 (605-650)||(45688308-45688353)
chr1 (603-652)||(50069265-50069314)
[»] scaffold0246 (1 HSPs)
scaffold0246 (605-693)||(2843-2931)
[»] scaffold1763 (1 HSPs)
scaffold1763 (605-650)||(397-442)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 436 - 762
Target Start/End: Original strand, 24326786 - 24327101
Alignment:
Q  436 taaggaaaatgatcagatgaatgtaaagggtccgcataagaaatatatctatccaatttcgaacaagttaccaaatgtttccaaagaacgaactacaacc 535  Q
    |||| |||||||| ||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24326786 taagtaaaatgataagatgaacgtaaaaggaccgcagaagaaatatatctatccaatttcgaacaagttaccaaatgtttccaaagaacgaactacaacc 24326885  T
Q  536 ctaaaataaattattcgccgtttcgtcggaaccacaactagatacttaagcccgagtgtcatgatgaaggaattctgctcattatccaaatggattcgct 635  Q
    ||||||||||| ||||||||||| ||| ||| |||||           ||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  24326886 ctaaaataaatgattcgccgttttgtcagaatcacaa-----------agcccgagtgtcatgatgaaggaattctgctcattactcaaatgaattcgct 24326974  T
Q  636 cattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtgatttaaaacaagtagtgtgacttaactcacgt 735  Q
    |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||     
T  24326975 cattcccaaaataaatgacatttttacccttacttgacttaacttgcgttagtgcaaaatgctacgtgacttaagacaaatagtgtgacttaactcacgc 24327074  T
Q  736 tagtataaaatcatacgtaacttaagt 762  Q
    ||||| |||| ||||||| ||||||||    
T  24327075 tagtacaaaaccatacgtgacttaagt 24327101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 17436619 - 17436569
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  17436619 gaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgacc 17436569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 31522613 - 31522563
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  31522613 gaattctgctcattacccaaatggttccgctcattcccaaagtaaatgacc 31522563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 605 - 654
Target Start/End: Complemental strand, 32275849 - 32275800
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgac 654  Q
    ||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  32275849 gaattatgctcattatccaaatggttccgctcattcccaaagtaaatgac 32275800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 653
Target Start/End: Original strand, 32274184 - 32274232
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||||||    
T  32274184 gaattatgctcattgcccaaatggattcgctcattcccaaagtaaatga 32274232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 605 - 652
Target Start/End: Complemental strand, 807247 - 807200
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatg 652  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||||    
T  807247 gaattctgctctttatccaaatagattcgctcattcctaaagtaaatg 807200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 14153354 - 14153404
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||||||| |||||||  || |||||||||||||||||||||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgacc 14153404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 650
Target Start/End: Original strand, 17436036 - 17436081
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||| |||||||||| ||||||| | |||||||||||||||||||    
T  17436036 gaattttgctcattattcaaatggttccgctcattcccaaagtaaa 17436081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 605 - 762
Target Start/End: Original strand, 9418587 - 9418744
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtga 704  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||| |||| | ||||||||||   ||||||| ||||  |||||||| ||  ||||||    
T  9418587 gaattctgctcattacccaaatggtttcgctcattcccaaagtaaaagaccattttacccttacgcaacttaacatgcgcaagtgcaaattggaacgtga 9418686  T
Q  705 tttaaaacaagtagtgtgacttaactcacgttagtataaaatcatacgtaacttaagt 762  Q
     |||| ||| |||| ||||||||| ||||| ||||  ||||| | ||| |||||||||    
T  9418687 cttaagacaggtagcgtgacttaagtcacgctagtgcaaaatgacacgcaacttaagt 9418744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 605 - 653
Target Start/End: Complemental strand, 5967315 - 5967267
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5967315 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatga 5967267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 605 - 651
Target Start/End: Original strand, 31762241 - 31762287
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaat 651  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  31762241 gaattctgctcattattcaaatggattcgctcattcccaaagtaaat 31762287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 739
Target Start/End: Complemental strand, 9388008 - 9387874
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtga 704  Q
    ||||||| ||||||| | |||||| || ||||||||||||| |||| |||||| |||||||||    | ||||| |||||||||||||| ||  ||||||    
T  9388008 gaattctactcattacctaaatggttttgctcattcccaaaataaaagacctttttacccttatgcaatttaacatgcgttagtgcaaattggaacgtga 9387909  T
Q  705 tttaaaacaagtagtgtgacttaactcacgttagt 739  Q
     |||| ||| ||||  |||||||| ||||| ||||    
T  9387908 cttaagacaggtagcatgacttaagtcacgctagt 9387874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 651
Target Start/End: Original strand, 33228166 - 33228214
Alignment:
Q  603 aggaattctgctcattatccaaatggattcgctcattcccaaagtaaat 651  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  33228166 aggaattctgctctttatccaaatggattcaatcattcccaaagtaaat 33228214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 33220865 - 33220820
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||||||||||||| |||||||| ||| |||||||||||||||||    
T  33220865 gaattctgctcattacccaaatggtttcactcattcccaaagtaaa 33220820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 605 - 653
Target Start/End: Complemental strand, 34279639 - 34279591
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    |||||||||||||||   ||||||||||||||||||| |||||||||||    
T  34279639 gaattctgctcattacttaaatggattcgctcattcctaaagtaaatga 34279591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 605 - 653
Target Start/End: Complemental strand, 43641051 - 43641003
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    ||||||||||||||| |||||||| || ||||||| |||||||||||||    
T  43641051 gaattctgctcattacccaaatggtttggctcatttccaaagtaaatga 43641003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 652
Target Start/End: Original strand, 33220024 - 33220070
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatg 652  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||    
T  33220024 gaattctgctcattatccaaatggttccgctcatt-ccaaagtaaatg 33220070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 3588340 - 3588390
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||| |||||||| |||||| | |||||| ||||||||||||||    
T  3588340 gaattctgctctttatccaattggatttgatcattctcaaagtaaatgacc 3588390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 23559061 - 23559016
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    |||||||||||||||||||||||| | |||||||| |||| |||||    
T  23559061 gaattctgctcattatccaaatggttccgctcattgccaaggtaaa 23559016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 9e-23; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 605 - 728
Target Start/End: Complemental strand, 37577318 - 37577195
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtga 704  Q
    ||||||||||||||||||||||   |||||||||||| |||||||| || ||| ||||||||||   |||||||||||| ||||| |||||| |||||||    
T  37577318 gaattctgctcattatccaaataatttcgctcattcctaaagtaaaagatctttttacccttacgcaacttaacttgcgctagtgtaaaatggtacgtga 37577219  T
Q  705 tttaaaacaagtagtgtgacttaa 728  Q
    ||||| ||| ||||  ||||||||    
T  37577218 tttaagacaggtagcatgacttaa 37577195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 605 - 728
Target Start/End: Original strand, 628088 - 628211
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtga 704  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||| ||| || ||||||||||   ||||||| |||| |||| |||| ||  | ||||    
T  628088 gaattctgctcattacccaaatggtttcgctcattcctaaagtaaaagacttttttacccttacgcaacttaacatgcgctagttcaaattggaatgtga 628187  T
Q  705 tttaaaacaagtagtgtgacttaa 728  Q
     |||| ||| |||| |||||||||    
T  628188 cttaagacaggtagagtgacttaa 628211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 608 - 655
Target Start/End: Complemental strand, 24974221 - 24974174
Alignment:
Q  608 ttctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  24974221 ttctgctcattatccaaatggatttgctcattcccaaagtaaatgacc 24974174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 606 - 655
Target Start/End: Original strand, 27992116 - 27992165
Alignment:
Q  606 aattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||    
T  27992116 aattatgctcattattcaaatggatttgctcattcccaaagtaaatgacc 27992165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 608 - 653
Target Start/End: Complemental strand, 36501940 - 36501895
Alignment:
Q  608 ttctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||    
T  36501940 ttctgctcattacccagatggattcgctcattcccaaagtaaatga 36501895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 739
Target Start/End: Complemental strand, 40923966 - 40923838
Alignment:
Q  611 tgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtgatttaaa 710  Q
    ||||||||| |||||||| |||||||||||| |||||||| |||||| ||| ||||||   ||||||| |||| || || ||| ||  | |||| ||||     
T  40923966 tgctcattacccaaatggtttcgctcattcctaaagtaaaagacctttttatccttacacaacttaacatgcgctaatgtaaattggaatgtgacttaag 40923867  T
Q  711 acaagtagtgtgacttaactcacgttagt 739  Q
    ||| |||| ||||||||| ||||| ||||    
T  40923866 acaggtagcgtgacttaagtcacgctagt 40923838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 653
Target Start/End: Original strand, 54208178 - 54208228
Alignment:
Q  603 aggaattctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    ||||||| ||||| |||||||||||| || |||||||||||||||||||||    
T  54208178 aggaattatgctctttatccaaatggttttgctcattcccaaagtaaatga 54208228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 55527991 - 55527941
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||||||||  ||||||||||||||||| |||||| ||||||||    
T  55527991 gaattctgctcattatttaaatggattcgctcatttccaaagcaaatgacc 55527941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 611 - 651
Target Start/End: Original strand, 55312075 - 55312115
Alignment:
Q  611 tgctcattatccaaatggattcgctcattcccaaagtaaat 651  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  55312075 tgctcattattcaaatggaatcgctcattcccaaagtaaat 55312115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 652
Target Start/End: Complemental strand, 33164583 - 33164536
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatg 652  Q
    ||||||||||||||| |||||||| | ||||||||| |||||||||||    
T  33164583 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatg 33164536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 668
Target Start/End: Original strand, 37030909 - 37030972
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttac 668  Q
    ||||| || |||||| |||||||  || |||||||||||||||||| |||||| ||||||||||    
T  37030909 gaattatggtcattacccaaatgattttgctcattcccaaagtaaaagacctttttacccttac 37030972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 34235782 - 34235732
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||| ||||||||| |||||||| | |||||||||| |||||||||||||    
T  34235782 gaattatgctcattacccaaatggttccgctcattcctaaagtaaatgacc 34235732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 683
Target Start/End: Original strand, 37576543 - 37576621
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcg 683  Q
    ||||||||||||||| ||||| || || |||| || |||||||||||| || | |||||| ||| ||| ||||||||||    
T  37576543 gaattctgctcattacccaaacggttttgctcgtttccaaagtaaatgtccatattacccctacgtgagttaacttgcg 37576621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 597 - 651
Target Start/End: Original strand, 45237403 - 45237457
Alignment:
Q  597 tgatgaaggaattctgctcattatccaaatggattcgctcattcccaaagtaaat 651  Q
    ||||||| |||||||||||||||  |||||||||||||| ||| | |||||||||    
T  45237403 tgatgaatgaattctgctcattactcaaatggattcgcttatttctaaagtaaat 45237457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 651
Target Start/End: Complemental strand, 51719852 - 51719806
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaat 651  Q
    |||||||||| |||| ||||||||||||||| ||| |||||||||||    
T  51719852 gaattctgcttattacccaaatggattcgcttatttccaaagtaaat 51719806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 605 - 739
Target Start/End: Original strand, 23487 - 23621
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtga 704  Q
    |||||||||||||||| ||||||| || |||||||| ||||||||| |||||| ||||||||||   ||||||| |||| ||||||||| ||  ||||||    
T  23487 gaattctgctcattattcaaatggttttgctcattctcaaagtaaaagacctttttacccttacacaacttaacatgcgctagtgcaaattggaacgtga 23586  T
Q  705 tttaaaacaagtagtgtgacttaactcacgttagt 739  Q
     |||| ||| |||| || |||||| ||||| ||||    
T  23587 cttaagacaggtagcgtcacttaagtcacgctagt 23621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 605 - 739
Target Start/End: Original strand, 44430418 - 44430552
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtga 704  Q
    |||||||||||||||||||||||| || |||||||||||||||||| || | | ||||||||||   ||||||| |||| ||||||||| ||  ||||||    
T  44430418 gaattctgctcattatccaaatggttttgctcattcccaaagtaaaagatcattttacccttacgcaacttaacatgcgctagtgcaaattggaacgtga 44430517  T
Q  705 tttaaaacaagtagtgtgacttaactcacgttagt 739  Q
     |||| ||| |||| | ||||||| ||||| ||||    
T  44430518 cttaagacaggtagcgcgacttaagtcacgctagt 44430552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 622 - 728
Target Start/End: Complemental strand, 50664246 - 50664140
Alignment:
Q  622 caaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtgatttaaaacaagtagtgt 721  Q
    ||||||| |||||||||| | |||||||| |||||| ||||| ||||   |||||||||||| |||||||||||| |||||||||||| ||| |||| ||    
T  50664246 caaatggtttcgctcatttctaaagtaaaagacctttttacctttacgcaacttaacttgcgctagtgcaaaatggtacgtgatttaagacaggtagcgt 50664147  T
Q  722 gacttaa 728  Q
     ||||||    
T  50664146 aacttaa 50664140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 605 - 654
Target Start/End: Original strand, 15040681 - 15040730
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgac 654  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15040681 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgac 15040730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 605 - 653
Target Start/End: Complemental strand, 53814639 - 53814591
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  53814639 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatga 53814591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 606 - 667
Target Start/End: Complemental strand, 13843670 - 13843609
Alignment:
Q  606 aattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttaccctta 667  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| || | | |||||||||    
T  13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaaagatcattttaccctta 13843609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 35069524 - 35069474
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||||||||| ||||||||||| ||||| | |||||||||||||    
T  35069524 gaattctgctcattatctaaatggattcgttcatttctaaagtaaatgacc 35069474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 650
Target Start/End: Original strand, 4969875 - 4969920
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||    
T  4969875 gaattctgctcattacccaaatggttccgctcattcccaaagtaaa 4969920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 6162760 - 6162715
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||    
T  6162760 gaattctgctcattacccaaatggttccgctcattcccaaagtaaa 6162715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 611 - 655
Target Start/End: Original strand, 7665739 - 7665783
Alignment:
Q  611 tgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||    
T  7665739 tgctcatttcccaaatggattcgctcattcgcaaagtaaatgacc 7665783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 605 - 653
Target Start/End: Original strand, 39645774 - 39645822
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    |||||| |||||||||| ||||||||||| |||||| ||||||||||||    
T  39645774 gaattccgctcattatctaaatggattcgttcattcgcaaagtaaatga 39645822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 668
Target Start/End: Original strand, 3860246 - 3860309
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttac 668  Q
    |||||||| ||||||||||||||| ||||||||||| |||| |||| ||  || ||||||||||    
T  3860246 gaattctgttcattatccaaatggtttcgctcattctcaaaataaaagatatttttacccttac 3860309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 40517601 - 40517551
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||| ||| ||||| || |||||||||||| |||||||||||||    
T  40517601 gaattctgctctttacccaaacggtttcgctcattcctaaagtaaatgacc 40517551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 654
Target Start/End: Original strand, 53824291 - 53824339
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgac 654  Q
    |||||||||| |||| ||||||||| | ||||||||||||||||||||||    
T  53824291 gaattctgcttattacccaaatggaat-gctcattcccaaagtaaatgac 53824339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 605 - 734
Target Start/End: Original strand, 44552026 - 44552155
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtga 704  Q
    |||||||||||||||||||||||| |||||||||||  ||| |||| |||||| ||| ||||||   ||||||| |||| ||||||||| ||  ||||||    
T  44552026 gaattctgctcattatccaaatggtttcgctcattcttaaaataaaagacctttttatccttacgcaacttaacatgcgctagtgcaaattgaaacgtga 44552125  T
Q  705 tttaaaacaagtagtgtgacttaactcacg 734  Q
     |||| ||| |||| ||||||||| |||||    
T  44552126 cttaagacaggtagcgtgacttaagtcacg 44552155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 608 - 655
Target Start/End: Complemental strand, 5247 - 5200
Alignment:
Q  608 ttctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgacc 5200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 605 - 654
Target Start/End: Complemental strand, 33839520 - 33839471
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgac 654  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  33839520 gaattctgctctttatccaaatggattcgctcattctcaaagtaaatgac 33839471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 609 - 653
Target Start/End: Original strand, 38386178 - 38386222
Alignment:
Q  609 tctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  38386178 tctgctcattatccaaatggattcgctcatttccaaagtaaatga 38386222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 604 - 655
Target Start/End: Complemental strand, 19365474 - 19365423
Alignment:
Q  604 ggaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    |||||||||||||||| | |||||||||||||||||||||||  ||||||||    
T  19365474 ggaattctgctcattacctaaatggattcgctcattcccaaataaaatgacc 19365423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 650
Target Start/End: Original strand, 5060848 - 5060893
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||||| |||||||||||||||| | |||||||||||||||||||    
T  5060848 gaattctactcattatccaaatggttccgctcattcccaaagtaaa 5060893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 652
Target Start/End: Complemental strand, 10527064 - 10527015
Alignment:
Q  603 aggaattctgctcattatccaaatggattcgctcattcccaaagtaaatg 652  Q
    ||||||||||||| ||| ||||||||||||  ||||||||||||||||||    
T  10527064 aggaattctgctctttacccaaatggattcaatcattcccaaagtaaatg 10527015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 605 - 653
Target Start/End: Complemental strand, 5061806 - 5061758
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    ||||||||||||||| |||||||||||| |||||| ||||| |||||||    
T  5061806 gaattctgctcattacccaaatggattcactcatttccaaaataaatga 5061758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 28138759 - 28138809
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||| ||| |||||||  || |||||||||||||||||||||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgacc 28138809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 28139513 - 28139463
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||  ||| ||||||||||| || ||||||||||||||||||||    
T  28139513 gaattctgctttttacccaaatggatttgcccattcccaaagtaaatgacc 28139463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 639
Target Start/End: Original strand, 38790884 - 38790918
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcatt 639  Q
    |||||||||||||||||||||||| ||||||||||    
T  38790884 gaattctgctcattatccaaatggtttcgctcatt 38790918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 20379746 - 20379701
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||| ||||||||||| |||||| | |||||||||||||||||||    
T  20379746 gaattatgctcattatctaaatggttccgctcattcccaaagtaaa 20379701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 650
Target Start/End: Original strand, 42548161 - 42548206
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||||||||||||| |||||| | || ||||||||||||||||||    
T  42548161 gaattctgctcattacccaaatcgttttgctcattcccaaagtaaa 42548206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 603 - 655
Target Start/End: Original strand, 8273243 - 8273295
Alignment:
Q  603 aggaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8273243 aggaattctgctcattacccaaatggattcgctcattcccaaagtaaatgacc 8273295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 609 - 739
Target Start/End: Complemental strand, 25678962 - 25678832
Alignment:
Q  609 tctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtgattta 708  Q
    ||||||||||| | |||||| |||||| |||||||||||||| |||||| ||||||||||   ||||||| |||| | ||||||| ||  |||||| |||    
T  25678962 tctgctcattaccaaaatggtttcgctgattcccaaagtaaaagacctttttacccttacacaacttaacatgcgcttgtgcaaattggaacgtgactta 25678863  T
Q  709 aaacaagtagtgtgacttaactcacgttagt 739  Q
    | ||| |||| ||||||||| ||||| ||||    
T  25678862 agacatgtagcgtgacttaagtcacgctagt 25678832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 739
Target Start/End: Complemental strand, 943321 - 943188
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtga 704  Q
    |||||||| |||||||||| |||| |||||||||||  |||||||| ||| || ||||||||||   ||||||| |||| | ||||||| ||  ||||||    
T  943321 gaattctgttcattatccagatggtttcgctcattcataaagtaaaagacttttttacccttacgcaacttaacatgcgct-gtgcaaattggaacgtga 943223  T
Q  705 tttaaaacaagtagtgtgacttaactcacgttagt 739  Q
     |||| ||| |||| ||||||||| ||||| ||||    
T  943222 cttaagacaggtagcgtgacttaagtcacgctagt 943188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 655
Target Start/End: Complemental strand, 22788065 - 22788013
Alignment:
Q  603 aggaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||||| ||| ||||||||||| | |||||||||||||||||||||    
T  22788065 aggaattctgctctttacccaaatggatttgttcattcccaaagtaaatgacc 22788013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 733
Target Start/End: Complemental strand, 24929411 - 24929283
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtga 704  Q
    ||||||||||||||| | |||||| |||||| |||||||||||||| || ||| ||| ||||||   ||||||| | |||| ||| ||| ||  ||||||    
T  24929411 gaattctgctcattaccaaaatggtttcgctgattcccaaagtaaaagatctttttatccttacgcaacttaacatacgtttgtgtaaattgaaacgtga 24929312  T
Q  705 tttaaaacaagtagtgtgacttaactcac 733  Q
     |||| ||| |||| ||||||||| ||||    
T  24929311 cttaagacaggtagcgtgacttaagtcac 24929283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 37893086 - 37893041
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    |||||||||| |||| |||||||| |||||||||||||||||||||    
T  37893086 gaattctgctaattacccaaatggtttcgctcattcccaaagtaaa 37893041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 25389928 - 25389878
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||| |||  |||||||||| |||||||| ||||||||||||||    
T  25389928 gaattctgctctttactcaaatggatttgctcattctcaaagtaaatgacc 25389878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 650
Target Start/End: Original strand, 20685006 - 20685051
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||||||||||||| |||||||| | ||||||||| |||||||||    
T  20685006 gaattctgctcattacccaaatggttccgctcattctcaaagtaaa 20685051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 652
Target Start/End: Complemental strand, 38147144 - 38147103
Alignment:
Q  611 tgctcattatccaaatggattcgctcattcccaaagtaaatg 652  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||    
T  38147144 tgctctttacccaaatggattcgctcattcctaaagtaaatg 38147103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 603 - 654
Target Start/End: Original strand, 34016000 - 34016051
Alignment:
Q  603 aggaattctgctcattatccaaatggattcgctcattcccaaagtaaatgac 654  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  34016000 aggaattctgctcattacctaaatggattcgctcattcccaaagtaaatgac 34016051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 28677886 - 28677936
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  28677886 gaattctgctcattatccaaatggaatcgctcattcctaaagtaaatgacc 28677936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 604 - 693
Target Start/End: Complemental strand, 36933301 - 36933212
Alignment:
Q  604 ggaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaa 693  Q
    ||||||||||||||||| ||||||| |||||| |||| ||||||||| |||||| |||| |||||   ||||||| |||| |||||||||    
T  36933301 ggaattctgctcattattcaaatggtttcgcttattctcaaagtaaaagacctttttactcttacgcaacttaacatgcgctagtgcaaa 36933212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 603 - 655
Target Start/End: Original strand, 759158 - 759210
Alignment:
Q  603 aggaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  759158 aggaattctgctcattacctaaatggattcgatcattcccaaagtaaatgacc 759210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 611 - 654
Target Start/End: Complemental strand, 6706107 - 6706064
Alignment:
Q  611 tgctcattatccaaatggattcgctcattcccaaagtaaatgac 654  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  6706107 tgctcattatccaaatggattcgctcatttccaaagtaaatgac 6706064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 633 - 734
Target Start/End: Complemental strand, 34924184 - 34924083
Alignment:
Q  633 gctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaaatgctacgtgatttaaaacaagtagtgtgacttaactca 732  Q
    |||| ||| |||| ||||||||||| |||||||||| | ||||||||| || |||| ||||||||| | ||| ||||  || |||| |||||||||||||    
T  34924184 gctcgttcgcaaaataaatgacctttttacccttacataacttaacttacgctagtacaaaatgctgcttgacttaagtcacgtagcgtgacttaactca 34924085  T
Q  733 cg 734  Q
    ||    
T  34924084 cg 34924083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 653
Target Start/End: Original strand, 17636344 - 17636392
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  17636344 gaattctgctcattacctaaatggattcgctcattcccaaaataaatga 17636392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 605 - 652
Target Start/End: Complemental strand, 6159020 - 6158973
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatg 652  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||    
T  6159020 gaattctgctcattacttaaatggattcgctcattcccaaagtaaatg 6158973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 605 - 652
Target Start/End: Complemental strand, 17644678 - 17644631
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatg 652  Q
    ||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  17644678 gaattgtgctcattaccgaaatggattcgctcattcccaaagtaaatg 17644631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 1145141 - 1145191
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||| |||||||||||||||  | ||||||||||||||||||||||||||    
T  1145141 gaattatgctcattatccaaacagtttcgctcattcccaaagtaaatgacc 1145191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 653
Target Start/End: Complemental strand, 5506766 - 5506721
Alignment:
Q  608 ttctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  5506766 ttctgctcattattcaactggattcactcattcccaaagtaaatga 5506721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 650
Target Start/End: Complemental strand, 30491869 - 30491828
Alignment:
Q  609 tctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  30491869 tctgctcattacccaaatgaattcgctcattcccaaagtaaa 30491828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 40266667 - 40266616
Alignment:
Q  605 gaattctgctcatt-atccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||| || | ||||||||||| |||||||||||||||||||||||    
T  40266667 gaattctgctcttttacccaaatggatttgctcattcccaaagtaaatgacc 40266616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 6636980 - 6636930
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||||||||||||||| ||  | ||||||||||| |||||||||    
T  6636980 gaattctgctcattatccaaatgaatatgttcattcccaaaataaatgacc 6636930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 25759840 - 25759890
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||| ||||||||| ||||  ||||||||| |||||||||||||    
T  25759840 gaattctgctctttatccaaacggatctgctcattcctaaagtaaatgacc 25759890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 34692372 - 34692425
Alignment:
Q  264 tttgccttcaaccatcaaaaagagggtagcttaattttgtccaagagtttttgt 317  Q
    |||||||||| ||| ||||||||| | ||||||||||| |||||||||| ||||    
T  34692372 tttgccttcacccaccaaaaagagaggagcttaattttatccaagagttgttgt 34692425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 605 - 654
Target Start/End: Complemental strand, 28446608 - 28446559
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgac 654  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  28446608 gaattttgctcattacccaaatggattcgctcattcccaaagtaaatgac 28446559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 5602944 - 5602994
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  5602944 gaattctgctctttacccaaatggatttgctcattcccaaagtaaatgacc 5602994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 33617644 - 33617694
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  33617644 gaattatgctcattacccaaatggattcgctcattctcaaagtaaatgacc 33617694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 605 - 650
Target Start/End: Original strand, 11821160 - 11821205
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||    
T  11821160 gaattctgctcattatccaaatggtttcgttcattcccaaagtaaa 11821205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 605 - 654
Target Start/End: Original strand, 28474792 - 28474841
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgac 654  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  28474792 gaattctgctcattacccaaatggattcactcattcccaaaataaatgac 28474841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 389 - 464
Target Start/End: Original strand, 43294969 - 43295044
Alignment:
Q  389 gaaacaaggaccaaataaattttttcgatccatccaattgaccaaactaaggaaaatgatcagatgaatgtaaagg 464  Q
    ||||||| ||||  ||| ||||| |||||||| ||||||||||||||| || ||||||||||||| ||| ||||||    
T  43294969 gaaacaaagaccggatagattttgtcgatccagccaattgaccaaactgagtaaaatgatcagatcaatataaagg 43295044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 605 - 652
Target Start/End: Complemental strand, 49033808 - 49033761
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatg 652  Q
    |||||||||||||||| ||||||| | |||||||||||||||||||||    
T  49033808 gaattctgctcattattcaaatggttccgctcattcccaaagtaaatg 49033761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 33401408 - 33401458
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||| |||||||||  ||||||||||||||||||| ||||||||||||||    
T  33401408 gaattttgctcattagtcaaatggattcgctcattctcaaagtaaatgacc 33401458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 50065478 - 50065528
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgacc 655  Q
    ||||||| ||||||| | ||||||| |||||||||||||||||||||||||    
T  50065478 gaattctactcattaccaaaatggaatcgctcattcccaaagtaaatgacc 50065528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 605 - 653
Target Start/End: Complemental strand, 28476060 - 28476012
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatga 653  Q
    ||||||||||||||| |||||||| | ||||||||| ||||||||||||    
T  28476060 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatga 28476012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 605 - 654
Target Start/End: Original strand, 35563364 - 35563409
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgac 654  Q
    |||||||||||||||    |||||||||||||||||||||||||||||||    
T  35563364 gaattctgctcatta----aatggattcgctcattcccaaagtaaatgac 35563409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 652
Target Start/End: Original strand, 39650196 - 39650243
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatg 652  Q
    ||||||||||||||| | |||||| |||||||||||| ||||||||||    
T  39650196 gaattctgctcattacctaaatggtttcgctcattcctaaagtaaatg 39650243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 767
Target Start/End: Original strand, 49030232 - 49030395
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttac-ccttacttgacttaacttgcgttagtgcaaaatgctacgtg 703  Q
    |||||||||||  |||  |||||| |||||||||||||||||||||  || || |||| ||||||   |||||||  ||| ||||||||| ||  |||||    
T  49030232 gaattctgctctgtatttaaatggtttcgctcattcccaaagtaaaacacatttttacaccttacgcaacttaacacgcgctagtgcaaattggaacgtg 49030331  T
Q  704 atttaaaacaagtagtgtgacttaactcacgttagtataaaatcatacgtaacttaagttacgt 767  Q
    | |||| ||| ||||  |||||||| ||||| ||||  ||||| | ||| ||||||||| ||||    
T  49030332 acttaagacaggtagcctgacttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgt 49030395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 650
Target Start/End: Complemental strand, 45691127 - 45691081
Alignment:
Q  604 ggaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    |||||| |||||||||  ||||||| |||||||||||||||||||||    
T  45691127 ggaattttgctcattactcaaatggtttcgctcattcccaaagtaaa 45691081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 650
Target Start/End: Complemental strand, 45691269 - 45691223
Alignment:
Q  604 ggaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    |||||| |||||||||  ||||||| |||||||||||||||||||||    
T  45691269 ggaattttgctcattactcaaatggtttcgctcattcccaaagtaaa 45691223  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 650
Target Start/End: Complemental strand, 45691411 - 45691365
Alignment:
Q  604 ggaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    |||||| |||||||||  ||||||| |||||||||||||||||||||    
T  45691411 ggaattttgctcattactcaaatggtttcgctcattcccaaagtaaa 45691365  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 3792532 - 3792487
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||| |||||||||||||||||| |||||||||| |||| |||||    
T  3792532 gaattatgctcattatccaaatggtttcgctcatttccaacgtaaa 3792487  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 650
Target Start/End: Original strand, 3792560 - 3792605
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||||||||||||| |||||| | |||||||||| ||||||||||    
T  3792560 gaattctgctcattacccaaatagtttcgctcatttccaaagtaaa 3792605  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 650
Target Start/End: Original strand, 45688308 - 45688353
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    |||||| ||||||||||||||||| |  ||||||||||||||||||    
T  45688308 gaattccgctcattatccaaatggttctgctcattcccaaagtaaa 45688353  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 652
Target Start/End: Complemental strand, 50069314 - 50069265
Alignment:
Q  603 aggaattctgctcattatccaaatggattcgctcattcccaaagtaaatg 652  Q
    ||||||||||||||||| |||||  |  ||||||||||||||||||||||    
T  50069314 aggaattctgctcattacccaaacagcatcgctcattcccaaagtaaatg 50069265  T

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Target: scaffold0246 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 605 - 693
Target Start/End: Complemental strand, 2931 - 2843
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaatgaccttcttacccttacttgacttaacttgcgttagtgcaaa 693  Q
    ||||||||||||||| |||||||| ||||||||||| |||| |||| |||||| |||||||||    ||||||| |||| |||||||||    
T  2931 gaattctgctcattacccaaatggtttcgctcattctcaaaataaaagacctttttacccttatgcaacttaacatgcgctagtgcaaa 2843  T

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Target: scaffold1763 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 442 - 397
Alignment:
Q  605 gaattctgctcattatccaaatggattcgctcattcccaaagtaaa 650  Q
    ||||| ||||| ||| |||||||| |||||||||||||||||||||    
T  442 gaattatgctctttacccaaatggtttcgctcattcccaaagtaaa 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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