View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21435_low_10 (Length: 410)

Name: NF21435_low_10
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21435_low_10
NF21435_low_10
[»] chr2 (20 HSPs)
chr2 (19-408)||(41073091-41073473)
chr2 (50-137)||(22440150-22440237)
chr2 (54-125)||(15080558-15080629)
chr2 (58-137)||(24765347-24765426)
chr2 (51-137)||(24792001-24792088)
chr2 (90-139)||(1346748-1346797)
chr2 (53-141)||(19890198-19890287)
chr2 (33-141)||(20128338-20128445)
chr2 (33-137)||(24762705-24762808)
chr2 (58-110)||(35022646-35022698)
chr2 (80-140)||(36866418-36866478)
chr2 (50-114)||(43791921-43791985)
chr2 (58-137)||(815008-815087)
chr2 (59-114)||(15690187-15690242)
chr2 (61-139)||(39309766-39309844)
chr2 (80-137)||(4762361-4762418)
chr2 (80-137)||(9448991-9449047)
chr2 (80-137)||(31017345-31017402)
chr2 (84-137)||(37978506-37978559)
chr2 (58-141)||(19514879-19514963)
[»] chr4 (23 HSPs)
chr4 (58-137)||(12618709-12618788)
chr4 (49-114)||(47461048-47461113)
chr4 (62-141)||(23504749-23504828)
chr4 (50-138)||(5798993-5799081)
chr4 (58-138)||(29256796-29256876)
chr4 (31-138)||(11260568-11260675)
chr4 (48-125)||(14948992-14949069)
chr4 (49-110)||(16556006-16556067)
chr4 (64-128)||(50086429-50086493)
chr4 (53-92)||(32104303-32104342)
chr4 (48-141)||(7852548-7852642)
chr4 (80-137)||(51736366-51736423)
chr4 (80-141)||(51834922-51834983)
chr4 (53-137)||(48315936-48316020)
chr4 (64-128)||(50343857-50343921)
chr4 (33-108)||(32692943-32693017)
chr4 (62-96)||(2076846-2076880)
chr4 (58-96)||(54974734-54974772)
chr4 (61-138)||(4394919-4394996)
chr4 (80-141)||(49400620-49400681)
chr4 (70-110)||(9629788-9629828)
chr4 (89-141)||(49084447-49084499)
chr4 (90-138)||(54503298-54503346)
[»] chr7 (11 HSPs)
chr7 (37-137)||(39156032-39156131)
chr7 (50-114)||(2347452-2347516)
chr7 (57-139)||(35599816-35599898)
chr7 (51-137)||(46726148-46726234)
chr7 (48-108)||(2959579-2959639)
chr7 (57-137)||(32699766-32699845)
chr7 (63-114)||(4133810-4133861)
chr7 (95-138)||(18219137-18219180)
chr7 (52-98)||(7723357-7723403)
chr7 (80-138)||(25886181-25886239)
chr7 (89-138)||(29711539-29711588)
[»] chr1 (15 HSPs)
chr1 (48-108)||(2484919-2484979)
chr1 (59-137)||(26604948-26605026)
chr1 (87-141)||(8794424-8794478)
chr1 (87-137)||(38748765-38748815)
chr1 (33-110)||(9534411-9534487)
chr1 (62-141)||(39150590-39150669)
chr1 (47-114)||(50222611-50222678)
chr1 (73-139)||(4617934-4618000)
chr1 (80-141)||(8365511-8365572)
chr1 (43-92)||(30596527-30596576)
chr1 (48-137)||(32562358-32562447)
chr1 (60-93)||(35438046-35438079)
chr1 (64-128)||(14774123-14774187)
chr1 (76-128)||(44329485-44329537)
chr1 (80-128)||(44329617-44329665)
[»] chr3 (10 HSPs)
chr3 (50-137)||(25753497-25753584)
chr3 (35-141)||(48811361-48811466)
chr3 (50-138)||(38156511-38156598)
chr3 (91-141)||(8101457-8101507)
chr3 (51-137)||(45529127-45529213)
chr3 (58-119)||(1675967-1676028)
chr3 (37-114)||(19898096-19898173)
chr3 (78-138)||(2568199-2568259)
chr3 (48-92)||(29793924-29793968)
chr3 (62-114)||(55110062-55110114)
[»] chr5 (6 HSPs)
chr5 (48-137)||(9276584-9276674)
chr5 (50-114)||(31558033-31558097)
chr5 (53-137)||(41583555-41583639)
chr5 (48-134)||(39568121-39568208)
chr5 (59-120)||(7606939-7607000)
chr5 (49-137)||(24173193-24173281)
[»] chr8 (13 HSPs)
chr8 (48-108)||(44960504-44960564)
chr8 (53-96)||(40852101-40852144)
chr8 (80-137)||(33364302-33364359)
chr8 (80-140)||(4384172-4384232)
chr8 (55-141)||(1369870-1369957)
chr8 (87-137)||(10893475-10893525)
chr8 (63-137)||(27734360-27734434)
chr8 (85-139)||(27801268-27801322)
chr8 (58-128)||(32646840-32646909)
chr8 (85-137)||(167886-167938)
chr8 (53-137)||(11727910-11727993)
chr8 (62-114)||(36819700-36819752)
chr8 (53-129)||(39691124-39691200)
[»] scaffold1444 (1 HSPs)
scaffold1444 (62-141)||(951-1030)
[»] chr6 (6 HSPs)
chr6 (58-137)||(15588667-15588746)
chr6 (85-139)||(6555080-6555134)
chr6 (51-108)||(4806511-4806568)
chr6 (89-138)||(23399121-23399170)
chr6 (59-138)||(9301919-9301999)
chr6 (62-114)||(30396282-30396334)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 41073091 - 41073473
Alignment:
Q  19 ttaacccctccagaacactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaa 118  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41073091 ttaacccctccggaacactctttaaagaccttt-aataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctga 41073189  T
Q  119 aagaataatttctaaatttaggagcagcaaaacctatacttaaattaaagtttttgttttaagactaaattaatgtaggatcgtaaattagtaaatcact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41073190 aagaataatttctaaatttaggagcagcaaaacctatacttaaattaaagtttttgttttaagactaaattaatgtaggatcgtaaattagtaaatcact 41073289  T
Q  219 aataaaattaagagttccccaaatttatcaaagtttccatgaacttctaagagtttactnnnnnnnnnnnnngagtttacatactaattaaatcgttttt 318  Q
    ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||             ||||||||||||||||||| ||||||||    
T  41073290 aataaaattaagagtttaccaaatttatcaaagtttccatcaacttctaagagtttact-----aaaaaaaagagtttacatactaattaactcgttttt 41073384  T
Q  319 acgt---atcgtaaactcattaaagttaagagttaacttaatagtttgacaatcttgtttacttgtagtacttgcaccccctttgcttctcct 408  Q
    ||||   |||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  41073385 acgtaaaatcgtaaactcattaaagttaagagttaactta----tttgacaatcttgtttacttgtagtacttgcacccccgttgattctcct 41073473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 22440150 - 22440237
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||| ||||||||||||||||||||| || |||||||||||||| || ||| |||||| ||| |  ||||||| |||||||||||    
T  22440150 tttaatagtaagtttttatgaaaatatatgtaatcaatgcattgaaacttgtaacatttgaattttttgaagaatattttctaaattt 22440237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 15080629 - 15080558
Alignment:
Q  54 ataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaata 125  Q
    |||||||||| |||| ||||| ||||||  ||||||||| ||||||||||||||| ||||| ||||||||||    
T  15080629 ataataagttcttataaaaatttatataaccaatgcattaaaatttataatatttaattttttaaaagaata 15080558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 24765426 - 24765347
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||| |||| ||||||| | || ||||||||||| ||||| |||||||||||||| | || ||||| |||||||||||    
T  24765426 taagttattataaaaatatgtgtaatcaatgcattggaatttgtaatatttgatttttttaaggaatattttctaaattt 24765347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 24792088 - 24792001
Alignment:
Q  51 ttaataataagtttttatgaaaat-atatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||| ||||||||||| ||||| |||| || ||||||||||| ||||| ||| |||||| ||| | |||||||| |||||||||||    
T  24792088 ttaatagtaagtttttataaaaattatatgtaatcaatgcattggaatttgtaacatttgacttttttaaagaatattttctaaattt 24792001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 1346797 - 1346748
Alignment:
Q  90 attgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    |||| |||||||||||||||||| | |||| |||||||||||||||||||    
T  1346797 attggaatttataatatttgattatttaaaggaataatttctaaatttag 1346748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 19890198 - 19890287
Alignment:
Q  53 aataataagttttta-tgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    ||||||||||||||| ||||||  | | |||| ||||||||| || || ||||| |||| ||| ||||||||||||| ||||||||||||    
T  19890198 aataataagtttttaatgaaaagttgtgtattaaatgcattggaaattgtaatagttgactttttaaaagaataattactaaatttagga 19890287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 20128445 - 20128338
Alignment:
Q  33 acactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttcta 132  Q
    |||||||||||| || ||||||||  || ||||||| ||||||  | || ||||||||||| ||||| ||| |||||| ||| | ||||||||| || ||    
T  20128445 acactctttaaacac-ttttaatagaaattttttataaaaatacgtgtaatcaatgcattggaatttgtaacatttgacttttttaaagaataaattata 20128347  T
Q  133 aatttagga 141  Q
    |||||||||    
T  20128346 aatttagga 20128338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 24762705 - 24762808
Alignment:
Q  33 acactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttcta 132  Q
    ||||||||||| |||| |||  || ||||||||||| ||||||| |||| |||||  |||| ||||| |||||||||| ||| | || ||||| ||||||    
T  24762705 acactctttaaggaccatttc-tagtaagtttttataaaaatatgtataatcaatatattggaatttgtaatatttgacttttttaaggaatattttcta 24762803  T
Q  133 aattt 137  Q
    |||||    
T  24762804 aattt 24762808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 35022698 - 35022646
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttga 110  Q
    ||||||||||| ||||||| | || |||||||||| |||||||||||||||||    
T  35022698 taagtttttattaaaatatgtgtaatcaatgcattaaaatttataatatttga 35022646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 36866418 - 36866478
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagg 140  Q
    |||| |||||||||||||||||||||||||| ||| | ||  ||| |||||||||||||||    
T  36866418 tatttaatgcattgaaatttataatatttgagtttttgaatcaatcatttctaaatttagg 36866478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 43791921 - 43791985
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||||||||||||||||| ||||| |||||| | ||||||||  ||||| ||| ||||||||||    
T  43791921 tttaataataagtttttataaaaatctatataattaatgcattagaatttgtaacatttgatttt 43791985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 815087 - 815008
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||||||||||||||   | || ||||||||||| ||||| | | |||||||||| | ||| ||||||||||||||||    
T  815087 taagtttttatgaaaatcggtgtaatcaatgcattggaatttgtgacatttgatttttttaaaaaataatttctaaattt 815008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 15690187 - 15690242
Alignment:
Q  59 aagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    |||||||||| ||||||| | || |||||||||| |||||| ||||||||||||||    
T  15690187 aagtttttataaaaatatgtgtaatcaatgcattaaaatttgtaatatttgatttt 15690242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 39309844 - 39309766
Alignment:
Q  61 gtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    |||||||| ||||||| |||| ||||| |||||||||||  ||||||||| ||  | |||||||| |||||||| ||||    
T  39309844 gtttttataaaaatatgtataatcaattcattgaaatttgaaatatttgacttatttaaagaatattttctaaacttag 39309766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 4762418 - 4762361
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| |||||||||||| |||||||| |||| ||| ||||| ||||||| ||||||||    
T  4762418 tattgaatgcattgaaaattataatagttgactttataaaataataattactaaattt 4762361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 9448991 - 9449047
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| |||| ||||||| |||||||| |||||||| ||||||||||||| ||||||||    
T  9448991 tattgaatgtattgaaaattataatagttgatttt-taaaagaataattactaaattt 9449047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 31017345 - 31017402
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| |||||||||||| ||| ||||||||| ||| | ||||||||||| ||||||||    
T  31017345 tattaaatgcattgaaaattaaaatatttgacttttttaaagaataattactaaattt 31017402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 37978559 - 37978506
Alignment:
Q  84 caatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||| |||||| |||||||||| ||| | |||||||| |||||||||||    
T  37978559 caatgcattaaaatttgtaatatttgacttttttaaagaatattttctaaattt 37978506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 19514963 - 19514879
Alignment:
Q  58 taagtttt-tatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||||||| ||||||||  | |||||||| |||||||| | |||||||| |||| |||  ||||||||||||  |||||||||||    
T  19514963 taagttttatatgaaaagttgtatattcattgcattgataattataatagttgacttttaaaaagaataattgttaaatttagga 19514879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 12618709 - 12618788
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||    
T  12618709 taagtttttatgaaaatttgtataatcaatgcattgaaatttataacatttgactttttaaaaaaataatttctaaattt 12618788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 47461048 - 47461113
Alignment:
Q  49 ttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  47461048 ttttaatagtaagtttttatgaaaatatatataatcaatacattgaaatttataatatttaatttt 47461113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 23504828 - 23504749
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    ||||||||||||| ||| |||||||| ||| |||| || ||||| |||||||| ||||||||||||||||||||||||||    
T  23504828 tttttatgaaaatgtatgtattcaatacatcgaaaattttaatagttgattttttaaaagaataatttctaaatttagga 23504749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 5798993 - 5799081
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    ||||||||||| ||||||| ||||| | |||| |||| ||||| |||||| |||||||||| ||| |||||||||| ||||||||||||    
T  5798993 tttaataataaatttttataaaaatttgtataatcaacgcatttaaatttgtaatatttgactttttaaaagaatattttctaaattta 5799081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 29256796 - 29256876
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||| ||||||||||  || || |||||||||||||||||||||||| ||||| | || ||||||||| ||||||||    
T  29256796 taagttttcatgaaaatatgaatgtttaatgcattgaaatttataatattttattttttgaaggaataatttttaaattta 29256876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 11260675 - 11260568
Alignment:
Q  31 gaacactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttc 130  Q
    |||||||||||||  | |||| |||| ||| ||| ||||||||||||| || ||| ||||||||||||| ||| |||||| ||| | |||||||| |||     
T  11260675 gaacactctttaagcatctttaaatagtaaatttatatgaaaatatatgtaatcattgcattgaaatttgtaacatttgacttttttaaagaatattttt 11260576  T
Q  131 taaattta 138  Q
    ||||||||    
T  11260575 taaattta 11260568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 14948992 - 14949069
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaata 125  Q
    |||||||||| |||||||||||||||| | | || ||||||||||||||||| ||| |||||| ||| | ||||||||    
T  14948992 cttttaataacaagtttttatgaaaatttgtgtaatcaatgcattgaaatttgtaacatttgacttttttaaagaata 14949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 16556067 - 16556006
Alignment:
Q  49 ttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttga 110  Q
    |||||||||||||||||||| ||||| | | || ||||||||||||||||| ||||||||||    
T  16556067 ttttaataataagtttttataaaaatttgtgtaatcaatgcattgaaatttgtaatatttga 16556006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 50086429 - 50086493
Alignment:
Q  64 tttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    ||||||||||||| | ||||||||||||||||| | | ||||||||||||| | |||||||||||    
T  50086429 tttatgaaaatatgtgtattcaatgcattgaaaatcaaaatatttgatttttttaaagaataatt 50086493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 32104342 - 32104303
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcatt 92  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  32104342 aataataagtttttatgaaaatttatatattcaatgcatt 32104303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 7852548 - 7852642
Alignment:
Q  48 cttttaataataagttttta-tgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||| |||| |||||||||| ||||||  | | |||| |||||||||||| || ||||| || ||||| ||||||||||||| ||||||||||||    
T  7852548 ctttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgaaaattgtaatagttaattttttaaaagaataattactaaatttagga 7852642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 51736423 - 51736366
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||| ||||||| |||||||| |||| ||| ||||||||||||| ||||||||    
T  51736423 tattcaatgtattgaaaattataatagttgactttttaaaagaataattgctaaattt 51736366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 51834983 - 51834922
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||| ||||||||| || |||||||| |||| ||| ||||||||||||| ||||||||||||    
T  51834983 tatttaatgcattggaaattataatagttgactttttaaaagaataattgctaaatttagga 51834922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 48316020 - 48315936
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| ||||||||||||||||  | | || ||||||||||||||||| ||| |||||| ||| | |||||||| |||| ||||||    
T  48316020 aatattaagtttttatgaaaagttgtgtaatcaatgcattgaaatttgtaacatttgacttttttaaagaatattttcaaaattt 48315936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 50343857 - 50343921
Alignment:
Q  64 tttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    |||||||||||| ||||| ||||| |||||||| ||| ||||||||| ||| | |||||||||||    
T  50343857 tttatgaaaatacatataatcaatacattgaaaattaaaatatttgacttttttaaagaataatt 50343921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 32692943 - 32693017
Alignment:
Q  33 acactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatattt 108  Q
    ||||||||||| |||| || |||| ||||||||||||||||||| | || |||||| |||||||||| ||| ||||    
T  32692943 acactctttaaggaccatt-aatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaacattt 32693017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 2076880 - 2076846
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaa 96  Q
    |||||||||||||||||||| ||||||||||||||    
T  2076880 tttttatgaaaatatatataatcaatgcattgaaa 2076846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 54974734 - 54974772
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaa 96  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  54974734 taagtttttataaaaatttatatattcaatgcattgaaa 54974772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 4394996 - 4394919
Alignment:
Q  61 gtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||| ||||||  | ||||||||| ||| ||| ||| ||||||||||||| | ||||||||||| || ||||||    
T  4394996 gtttttataaaaatacgtgtattcaatgtattaaaaattaaaatatttgatttttttaaagaataattacttaattta 4394919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 49400681 - 49400620
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||| ||| ||||| || || ||||| |||||||| ||||||||||||| ||||||||||||    
T  49400681 tattaaatacattggaaattgtaatagttgattttttaaaagaataattactaaatttagga 49400620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 9629828 - 9629788
Alignment:
Q  70 aaaatatatatattcaatgcattgaaatttataatatttga 110  Q
    |||||||||||||| ||| ||||||||||| ||||||||||    
T  9629828 aaaatatatatatttaatacattgaaatttgtaatatttga 9629788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 49084447 - 49084499
Alignment:
Q  89 cattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||||||| || ||||| |||| ||| ||||||||||||| ||||||||||||    
T  49084447 cattgaaaattgtaatagttgactttttaaaagaataattactaaatttagga 49084499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 54503346 - 54503298
Alignment:
Q  90 attgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    ||||||||||||||||||||| ||| |||||||| |||||  |||||||    
T  54503346 attgaaatttataatatttgactttttaaaagaacaattttaaaattta 54503298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 39156131 - 39156032
Alignment:
Q  37 tctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatt 136  Q
    ||||||||||||||| |||| ||| |||||||||||||  ||||||| | |||||||||||||| ||||||||| ||| ||||  ||||| || ||||||    
T  39156131 tctttaaagaccttt-aatagtaaatttttatgaaaatccatatattaagtgcattgaaatttaaaatatttgactttttaaagaaataacttttaaatt 39156033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 2347516 - 2347452
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||||| ||| ||||||| ||||| ||| || ||||||||||||||||| ||||||||||||||    
T  2347516 tttaatagtaaatttttattaaaatttatgtaatcaatgcattgaaatttgtaatatttgatttt 2347452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 35599816 - 35599898
Alignment:
Q  57 ataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    |||| ||||||||||||  ||| ||||||||||||||||||||  | ||||||| ||| | |||||||||||||  |||||||    
T  35599816 ataactttttatgaaaagttatgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaatttag 35599898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 46726234 - 46726148
Alignment:
Q  51 ttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||| ||| ||||||||||||  ||| || ||||||||||||||||| ||| |||||| ||| | |||||||| ||| |||||||    
T  46726234 ttaatagtaaatttttatgaaaaactatgtaatcaatgcattgaaatttgtaacatttgacttttttaaagaatattttttaaattt 46726148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 2959579 - 2959639
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatattt 108  Q
    ||||||||||||| ||||||||||||  ||| || |||||||||| |||||||||| ||||    
T  2959579 cttttaataataaatttttatgaaaaattatgtaatcaatgcattaaaatttataacattt 2959639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 32699766 - 32699845
Alignment:
Q  57 ataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||||||||||| ||||||||| | || | ||||| || ||||| |||||||| ||||| |||||||| |||||||    
T  32699766 ataagtttttatgaaaaaatatatatttattgtactgaaaattgtaatagttgattttttaaaa-aataatttttaaattt 32699845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 4133810 - 4133861
Alignment:
Q  63 ttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    |||||||||||| | |||| ||||||||||||||||| ||| ||||||||||    
T  4133810 ttttatgaaaatctttataatcaatgcattgaaatttgtaacatttgatttt 4133861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 18219137 - 18219180
Alignment:
Q  95 aatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||||||||||| ||| | |||||||||||||||||||||    
T  18219137 aatttataatatttgagttttttaaagaataatttctaaattta 18219180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 7723403 - 7723357
Alignment:
Q  52 taataataagtttttatgaaaatatatatattcaatgcattgaaatt 98  Q
    ||||||||||||||||| ||||| | ||||||||||||||| |||||    
T  7723403 taataataagtttttataaaaatttgtatattcaatgcattaaaatt 7723357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 25886239 - 25886181
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||| |||| ||||||| || ||||| |||| ||||||| |||||||||||||||||||    
T  25886239 tattaaatgtattgaaaattgtaatagttgactttctaagagaataatttctaaattta 25886181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 29711539 - 29711588
Alignment:
Q  89 cattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||| |||||||  |||||||| |||||||| ||||||||||||||    
T  29711539 cattgaaaattataattgttgattttttaaaagaaaaatttctaaattta 29711588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 2484919 - 2484979
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatattt 108  Q
    ||||| ||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  2484919 cttttgatagtaagcttttatgaaaatttatatatttaatgcattgaaatttataatattt 2484979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 26604948 - 26605026
Alignment:
Q  59 aagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||||||||||||| | ||||| ||||| |||||||||| ||||| || | ||| |||||||||||||| |||||||    
T  26604948 aagtttttatgaaaatttgtatatccaatgtattgaaatttgtaataatttactttttaaaagaataatttttaaattt 26605026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 8794478 - 8794424
Alignment:
Q  87 tgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||||||||| |||||||| |||| ||| ||||||||||||| ||||||||||||    
T  8794478 tgcattgaaaattataatagttgactttttaaaagaataattactaaatttagga 8794424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 38748765 - 38748815
Alignment:
Q  87 tgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||||||| |||||||| |||| ||| ||||||||||||||||||||||    
T  38748765 tgcattgaaaattataatagttgactttttaaaagaataatttctaaattt 38748815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 9534487 - 9534411
Alignment:
Q  33 acactctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttga 110  Q
    |||||||||||  |||||| |||||||| ||||||||||||| | || | | | ||||||||||||||||||||||||    
T  9534487 acactctttaagcaccttt-aataataaatttttatgaaaatttgtaaaattagtgcattgaaatttataatatttga 9534411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 39150669 - 39150590
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||| |||||||| ||| |||| ||||||||| || || ||||| |||| ||| || |||||||||| ||||||||||||    
T  39150669 ttttaatgaaaatttatgtattgaatgcattgtaaattgtaatagttgactttttacaagaataattactaaatttagga 39150590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 50222611 - 50222678
Alignment:
Q  47 ccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||| |||| ||| ||||||||||||||  | || |||||||||||||| ||| |||||||||||||    
T  50222611 cctttaaatagtaattttttatgaaaataagtgtaatcaatgcattgaaaattaaaatatttgatttt 50222678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 4618000 - 4617934
Alignment:
Q  73 atatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    |||||| ||||||||||||| ||| || || |||||| |||| ||||| |||||||||| |||||||    
T  4618000 atatatgtattcaatgcattcaaaattgtattatttggttttttaaaaaaataatttcttaatttag 4617934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 8365572 - 8365511
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||| |||||||||||  || ||||| |||||||| |||||||||||||  |||||||||||    
T  8365572 tattgaatgcattgaagattgtaatagttgattttttaaaagaataattattaaatttagga 8365511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 30596527 - 30596576
Alignment:
Q  43 aagaccttttaataataagtttttatgaaaatatatatattcaatgcatt 92  Q
    |||||||||||||||||| ||||||| ||||||| | || ||||||||||    
T  30596527 aagaccttttaataataattttttataaaaatatgtgtaatcaatgcatt 30596576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 32562358 - 32562447
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| |||| ||||||||||| ||||  | | |||||| |||||||||| || ||||| |||| ||| ||||| ||||||| ||||||||    
T  32562358 ctttaaatagtaagtttttataaaaaattgtgtattcactgcattgaaaattgtaatagttgaatttttaaaataataattactaaattt 32562447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 35438046 - 35438079
Alignment:
Q  60 agtttttatgaaaatatatatattcaatgcattg 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  35438046 agtttttatgaaaatatgtatattcaatgcattg 35438079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 14774187 - 14774123
Alignment:
Q  64 tttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    ||||||||||| | ||||||||||||||||||| |   ||||||||||||| ||||  |||||||    
T  14774187 tttatgaaaatgtgtatattcaatgcattgaaaatcgaaatatttgattttttaaacaaataatt 14774123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 44329537 - 44329485
Alignment:
Q  76 tatatattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    |||||||| |||||| ||||| |||||||| |||| ||| |||||||||||||    
T  44329537 tatatattaaatgcactgaaaattataataattgactttttaaaagaataatt 44329485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 44329665 - 44329617
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    |||| |||||||||||| |||||||| |||| ||| |||||||||||||    
T  44329665 tattgaatgcattgaaaattataatagttgactttttaaaagaataatt 44329617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 25753584 - 25753497
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||| ||||||||||||||||| ||| || | |||||||||||| |||||| |||||| ||| |  ||||||| |||||||||||    
T  25753584 tttaatagtaagtttttatgaaaatttatgtaattaatgcattgaaacttataacatttgactttattgaagaatattttctaaattt 25753497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 48811361 - 48811466
Alignment:
Q  35 actctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaa 134  Q
    |||||||||| || |||||||| ||||||||||||||||  | | || ||||||||||||||||| ||| ||| || ||| | || ||||| ||||||||    
T  48811361 actctttaaaaac-ttttaatagtaagtttttatgaaaaattgtgtaatcaatgcattgaaatttgtaacattagacttttttaatgaatattttctaaa 48811459  T
Q  135 tttagga 141  Q
    |||||||    
T  48811460 tttagga 48811466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 38156511 - 38156598
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    ||||||| |||  |||||| ||||||| | || ||||||||||||||||| ||| |||||| ||| ||||| |||| ||||||||||||    
T  38156511 tttaatagtaaacttttattaaaatatgtgtaatcaatgcattgaaatttgtaacatttgactttttaaaa-aatactttctaaattta 38156598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 8101507 - 8101457
Alignment:
Q  91 ttgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    ||||||||| ||| |||||||||| | || |||||||||||||||||||||    
T  8101507 ttgaaatttgtaacatttgattttttgaatgaataatttctaaatttagga 8101457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 45529127 - 45529213
Alignment:
Q  51 ttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||| ||||||||||||||||| ||| || |||||||| ||||| || |||  ||||| ||| |  ||||||| |||||||||||    
T  45529127 ttaatagtaagtttttatgaaaatttatgtaatcaatgcactgaaacttgtaacgtttgacttttttgaagaatattttctaaattt 45529213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 1675967 - 1676028
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaa 119  Q
    |||||||| |||||||||||| |||| |||| ||| ||||||| ||||||| ||||| ||||    
T  1675967 taagttttaatgaaaatatatgtatttaatgaattaaaatttaaaatatttaattttttaaa 1676028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 19898096 - 19898173
Alignment:
Q  37 tctttaaagaccttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||| |||||||||  ||  ||| ||||||||||||||| | || |||||||||||||| ||  |||||||||||||    
T  19898096 tcttttaagacctttacattgtaaatttttatgaaaatatgtgtaatcaatgcattgaaaattgaaatatttgatttt 19898173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 2568199 - 2568259
Alignment:
Q  78 tatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||||||||||  || |||||||| |||| |||  |||| |||||||||||||||||    
T  2568199 tatattcaatgcattataaattataataattgacttttaaaaaaaataatttctaaattta 2568259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 29793968 - 29793924
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcatt 92  Q
    |||| ||| |||||||||||| ||||||| |||||||||||||||    
T  29793968 ctttaaatgataagtttttataaaaatatgtatattcaatgcatt 29793924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 55110114 - 55110062
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||||||||||||||| || |||||||||||||| |   |||||||||||||    
T  55110114 tttttatgaaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttt 55110062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 9276584 - 9276674
Alignment:
Q  48 cttttaataataagttttta-tgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| |||| |||||||||| ||||||  ||| |||| |||||||||||| |||||||| |||||||| ||||| ||||||| ||||||||    
T  9276584 ctttaaatagtaagtttttaatgaaaagttatgtattgaatgcattgaaaattataatagttgattttttaaaaaaataattactaaattt 9276674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 31558033 - 31558097
Alignment:
Q  50 tttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||||||||| ||||||||||||| |||||| | |||| |||||||||| ||| ||||||||||    
T  31558033 tttaataataaatttttatgaaaatttatataataaatgtattgaaatttgtaacatttgatttt 31558097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 41583639 - 41583555
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||| ||| ||||||||||||| | | |||||||||||||| ||||| |||||||| | ||| | || |||||||||||||||||    
T  41583639 aatagtaaatttttatgaaaatctgtgtattcaatgcattggaatttgtaatatttaactttttgaaggaataatttctaaattt 41583555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 39568121 - 39568208
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttga-ttttctaaaagaataatttctaaa 134  Q
    |||| ||| ||| |||| ||||||||||||||||||||||  ||||||||||  | | ||||| |||||||||||||| |||| ||||    
T  39568121 ctttaaatgatatgtttatatgaaaatatatatattcaataaattgaaatttgaagtgtttgacttttctaaaagaatcatttttaaa 39568208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 7607000 - 7606939
Alignment:
Q  59 aagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaa 120  Q
    |||||||||  ||||||| | |||| ||||||||||||||| |||||||| ||||| |||||    
T  7607000 aagtttttacaaaaatatgtgtatttaatgcattgaaatttgtaatatttaattttttaaaa 7606939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 24173281 - 24173193
Alignment:
Q  49 ttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||||| |||| |||| ||||||||| | || | ||||||||| ||||| ||| |||| |||||  |||| |||| |||||||||||    
T  24173281 ttttaatagtaaggttttttgaaaatatttgtaattaatgcattggaatttgtaacatttaatttttaaaaaaaatattttctaaattt 24173193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 44960564 - 44960504
Alignment:
Q  48 cttttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatattt 108  Q
    ||||||||| ||| ||||||||||||| ||| || ||||||||||||||||| ||||||||    
T  44960564 cttttaatagtaaatttttatgaaaatttatgtaatcaatgcattgaaatttgtaatattt 44960504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 40852101 - 40852144
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcattgaaa 96  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  40852101 aatagtaagtttttatgaaaatatgtatattcaatgcattgaaa 40852144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 33364359 - 33364302
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||| ||||||||||||||||||| ||||| |||| ||| |||||| ||||||    
T  33364359 tattcaatgtattgaaatttataatatttaattttttaaaggaacaatttcaaaattt 33364302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 4384172 - 4384232
Alignment:
Q  80 tattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagg 140  Q
    |||| ||||||||| || || ||||| |||||||| ||||||||||||| |||||||||||    
T  4384172 tattgaatgcattggaaattgtaatagttgattttttaaaagaataattactaaatttagg 4384232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 1369870 - 1369957
Alignment:
Q  55 taataagtttt-tatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    ||||||||||| ||||||||  ||| |||| ||||||||| || || | ||| |||| ||| ||||||||||||| ||||||||||||    
T  1369870 taataagttttatatgaaaagttatctattgaatgcattggaaattgtgatagttgactttttaaaagaataattgctaaatttagga 1369957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 10893475 - 10893525
Alignment:
Q  87 tgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    |||||||||||||||||||||||| ||| | || ||||||||| |||||||    
T  10893475 tgcattgaaatttataatatttgactttttgaatgaataatttttaaattt 10893525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 27734360 - 27734434
Alignment:
Q  63 ttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||||||   | |||||||||||||| ||||| ||||||| || ||| | || |||||||||||||||||    
T  27734360 ttttatgaaaatccgtgtattcaatgcattggaatttgtaatattagactttttgaaggaataatttctaaattt 27734434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 27801268 - 27801322
Alignment:
Q  85 aatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    |||||||||||| || ||||| |||| ||| ||||||||||||| ||||||||||    
T  27801268 aatgcattgaaaattgtaatagttgactttttaaaagaataattactaaatttag 27801322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 32646909 - 32646840
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatt 128  Q
    ||||| ||||||||| ||||| || |||||||||| ||| ||| ||||||||| ||| |||||||||||||    
T  32646909 taagtatttatgaaa-tatatgtaatcaatgcattaaaaattaaaatatttgactttttaaaagaataatt 32646840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 167886 - 167938
Alignment:
Q  85 aatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||| || |||||||| |||| ||| |||||||||||||| |||||||    
T  167886 aatgcattggaaattataatagttgactttttaaaagaataatttttaaattt 167938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 11727910 - 11727993
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||||||| |||||||| | |||||| |||| ||||||| ||  | ||||||| ||| | |||||||||||||| |||||    
T  11727910 aataataagttttaatgaaaatttgtatatttaatgtattgaaaattgaagtatttgacttt-ttaaagaataatttcttaattt 11727993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 36819700 - 36819752
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||||| |||||||||||| | |||||||| ||| ||| |||||||||||||    
T  36819700 tttttataaaaatatatataattaatgcattaaaaattaaaatatttgatttt 36819752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 39691124 - 39691200
Alignment:
Q  53 aataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataattt 129  Q
    |||| ||| ||||||||||||| | | ||||||||||||||||| ||  | ||||||| ||| | ||||||||||||    
T  39691124 aatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattt 39691200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 951 - 1030
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttagga 141  Q
    |||||||||||| || | |||||||| |||||||| || ||||| |||| ||| |||||||| |||| ||||||||||||    
T  951 tttttatgaaaagatgtgtattcaatacattgaaaattgtaatagttgactttttaaaagaacaattgctaaatttagga 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 15588746 - 15588667
Alignment:
Q  58 taagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttctaaaagaataatttctaaattt 137  Q
    ||||||||||||||||  ||| || ||||||||||||||||| ||| |||| ||||| | |||||||| ||| |||||||    
T  15588746 taagtttttatgaaaaattatgtaatcaatgcattgaaatttgtaacatttaatttttttaaagaatattttataaattt 15588667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 6555080 - 6555134
Alignment:
Q  85 aatgcattgaaatttataatatttgattttctaaaagaataatttctaaatttag 139  Q
    ||||||||||||||||||| |||||| ||| | || ||||| |||||||||||||    
T  6555080 aatgcattgaaatttataacatttgacttttttaaggaatactttctaaatttag 6555134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 4806511 - 4806568
Alignment:
Q  51 ttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatattt 108  Q
    |||||| ||||||||||||||||||| | || |||||| |||||||||| ||| ||||    
T  4806511 ttaatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaacattt 4806568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 23399170 - 23399121
Alignment:
Q  89 cattgaaatttataatatttgattttctaaaagaataatttctaaattta 138  Q
    |||||||| |||||||| || | ||| |||||||||||||||||||||||    
T  23399170 cattgaaaattataatagttaactttttaaaagaataatttctaaattta 23399121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 9301999 - 9301919
Alignment:
Q  59 aagtttttatgaaaatatatatattcaatgcattgaaatttataatatttgattttct-aaaagaataatttctaaattta 138  Q
    ||||||||||||||   | |||||||||||||||| || | |||||  |||||||| | |||||||||||| |||||||||    
T  9301999 aagtttttatgaaacgttgtatattcaatgcattggaaataataattgttgattttttaaaaagaataattactaaattta 9301919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 30396334 - 30396282
Alignment:
Q  62 tttttatgaaaatatatatattcaatgcattgaaatttataatatttgatttt 114  Q
    ||||| ||||||| ||| || |||||||||||||| || ||||||||||||||    
T  30396334 tttttttgaaaatttatgtaatcaatgcattgaaaattgtaatatttgatttt 30396282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University