View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21435_low_12 (Length: 379)

Name: NF21435_low_12
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21435_low_12
NF21435_low_12
[»] chr1 (11 HSPs)
chr1 (1-365)||(3299862-3300227)
chr1 (86-365)||(43044214-43044493)
chr1 (85-365)||(43067498-43067778)
chr1 (85-365)||(43083057-43083337)
chr1 (148-365)||(43077375-43077592)
chr1 (151-328)||(7891776-7891953)
chr1 (151-365)||(38138647-38138861)
chr1 (151-352)||(45984493-45984694)
chr1 (173-329)||(50911742-50911898)
chr1 (253-328)||(40035520-40035595)
chr1 (85-125)||(43079762-43079802)
[»] chr6 (2 HSPs)
chr6 (143-366)||(7520508-7520731)
chr6 (151-366)||(7530045-7530260)
[»] chr4 (2 HSPs)
chr4 (154-365)||(4230747-4230958)
chr4 (175-298)||(19965381-19965504)
[»] chr8 (3 HSPs)
chr8 (151-356)||(4618968-4619173)
chr8 (178-312)||(4788300-4788434)
chr8 (178-312)||(4296746-4296880)
[»] chr5 (1 HSPs)
chr5 (151-329)||(16348426-16348604)
[»] chr2 (4 HSPs)
chr2 (156-335)||(33860118-33860297)
chr2 (175-309)||(16231484-16231618)
chr2 (181-308)||(34690149-34690276)
chr2 (181-308)||(34712561-34712688)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 3299862 - 3300227
Alignment:
Q  1 ccgaaaaacaagttaacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatcttcctgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299862 ccgaaaaacaagttaacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatcttcctgca 3299961  T
Q  101 cggttcacttcttcttcaatgctgactttgtttt-attaagtcctccgctgggatccttcttctccacagccttgatgacaccaacagccacagtttgac 199  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3299962 cggttcacttcttcttcaatgctgactttgtttttattaagtcctccgctgggatccttcttctccacagccttgatgacaccaacagccacagtctgac 3300061  T
Q  200 gcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcacc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300062 gcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcacc 3300161  T
Q  300 gttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaag 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300162 gttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaag 3300227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 86 - 365
Target Start/End: Original strand, 43044214 - 43044493
Alignment:
Q  86 atagatcttcctgcacggttcacttcttcttcaatgctgactttgttttattaagtcctccgctgggatccttcttctccacagccttgatgacaccaac 185  Q
    ||||||| |||||| |||||||||||||||||||||||||||| || |  ||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  43044214 atagatcatcctgctcggttcacttcttcttcaatgctgacttggtctgcttaagtcctccactgggatccttcttctccacagccttgatgaccccaac 43044313  T
Q  186 agccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaata 285  Q
    |||||||||||||||||| || || ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43044314 agccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaata 43044413  T
Q  286 ataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaag 365  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  43044414 ataccagcatcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatcaatcttagtaacaag 43044493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 85 - 365
Target Start/End: Complemental strand, 43067778 - 43067498
Alignment:
Q  85 gatagatcttcctgcacggttcacttcttcttcaatgctgactttgttttattaagtcctccgctgggatccttcttctccacagccttgatgacaccaa 184  Q
    |||||||| |||||| |||||||||||||||||||||||||||| || |  ||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  43067778 gatagatcatcctgctcggttcacttcttcttcaatgctgacttggtctgcttaagtcctccactgggatccttcttctccacagctttgatgacgccaa 43067679  T
Q  185 cagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaat 284  Q
    ||||||||||||||||||| || || ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43067678 cagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaat 43067579  T
Q  285 aataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaag 365  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  43067578 aataccagcatcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatcaatcttagtaacaag 43067498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 85 - 365
Target Start/End: Original strand, 43083057 - 43083337
Alignment:
Q  85 gatagatcttcctgcacggttcacttcttcttcaatgctgactttgttttattaagtcctccgctgggatccttcttctccacagccttgatgacaccaa 184  Q
    |||||| | |||||| | |||||||||||||||||||||||||| || |  ||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  43083057 gatagaccatcctgctcagttcacttcttcttcaatgctgacttggtctgcttaagtcctccactgggatccttcttctccacagctttgatgacgccaa 43083156  T
Q  185 cagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaat 284  Q
    ||||||||||||||||||| || || ||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43083157 cagccacagtttgacgcatgtctctaacagcaaaacgaccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaat 43083256  T
Q  285 aataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaag 365  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  43083257 aataccagcatcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatcaatcttagtaacaag 43083337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 148 - 365
Target Start/End: Complemental strand, 43077592 - 43077375
Alignment:
Q  148 ctgggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaag 247  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||| ||  |||||||||||||||||||| ||||||||||    
T  43077592 ctgggatccttctactccacagccgtgatgacaccaacagccacagtttgacgcttgtccctgatagtaaaacggccaagtggaggatattcagagaaag 43077493  T
Q  248 tctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcct 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| | |||||||| || | |||||||||||    
T  43077492 tctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccattcatcaggaatttgggcttcgtctcaatcaccataccagaacgcct 43077393  T
Q  348 gtcaatcttagtaacaag 365  Q
     |||||||| ||||||||    
T  43077392 atcaatcttggtaacaag 43077375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 151 - 328
Target Start/End: Complemental strand, 7891953 - 7891776
Alignment:
Q  151 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 250  Q
    |||||||| |||| |||| |||||||||| |||| |||||||||||||||||| || |||||||| ||||| ||||||| ||||||  |||  |||||||    
T  7891953 ggatccttattcttcacatccttgatgactccaatagccacagtttgacgcatgtctctgacagcaaaacgaccaagtgaaggatatgcagtaaaagtct 7891854  T
Q  251 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaa 328  Q
    | |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  7891853 ctaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaa 7891776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 151 - 365
Target Start/End: Complemental strand, 38138861 - 38138647
Alignment:
Q  151 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 250  Q
    ||||||||||||| |||| || ||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||   ||| |||  ||    
T  38138861 ggatccttcttcttcacaaccatgatgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagtggaggataagtagaaaaatcct 38138762  T
Q  251 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtc 350  Q
    | |||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| || |||   ||||||  ||||||    
T  38138761 ctaccaccatggacttggtgggaatcatcttaacaacaccagcatcaccattcttcaagaatttgggctccttctcgatttccaaaccagaaaacctgtc 38138662  T
Q  351 aatcttagtaacaag 365  Q
    || ||| ||||||||    
T  38138661 aaacttggtaacaag 38138647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 151 - 352
Target Start/End: Complemental strand, 45984694 - 45984493
Alignment:
Q  151 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 250  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| ||   || |||||| | |||||||| |||||||||||   |||||||| ||    
T  45984694 ggatccttcttcttcacagccttgatgactccaacagccacagtttgatgccagtctctgacaacaaaacggccgagtggaggatatagagagaaaggct 45984595  T
Q  251 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtc 350  Q
    | |||||||| ||||||||||||||||||||||||||||||| ||||||  || |||| |||||||||||| ||||||| ||||  ||||||| ||||||    
T  45984594 ctaccaccataggcttggtgggaatcatcttaataataccagtatcaccactcatcaaaaatttgggctccctctcaatttcctcaccagaacacctgtc 45984495  T
Q  351 aa 352  Q
    ||    
T  45984494 aa 45984493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 173 - 329
Target Start/End: Original strand, 50911742 - 50911898
Alignment:
Q  173 tgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtggg 272  Q
    ||||||| ||||||||||||||||||||||| || |||||||| |||||||| |||| |||| | |  || |||||||| |||| |||||||||||||||    
T  50911742 tgatgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccgagtgaaggaaatttggaaaaagtctctaccaacatgggcttggtggg 50911841  T
Q  273 aatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaat 329  Q
    |||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  50911842 aatcatctcaataacaccagcgtcaccattcttcaagaatttgggctccttctcaat 50911898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 40035595 - 40035520
Alignment:
Q  253 accaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaa 328  Q
    ||||||||||||||||| |||||||| | || ||  ||  ||||||| |||| ||||||||||||||||| |||||    
T  40035595 accaccatgggcttggttggaatcatttcaacaagccccccatcaccattctccaagaatttgggctcctgctcaa 40035520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 43079802 - 43079762
Alignment:
Q  85 gatagatcttcctgcacggttcacttcttcttcaatgctga 125  Q
    |||||||| ||||||||||||| ||| ||||||||||||||    
T  43079802 gatagatcatcctgcacggttcccttattcttcaatgctga 43079762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 143 - 366
Target Start/End: Complemental strand, 7520731 - 7520508
Alignment:
Q  143 ctccgctgggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcaga 242  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||| ||||| |||||||| ||||     
T  7520731 ctccggtgggatccttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacggcaaaacgtccaagaggaggatattcagc 7520632  T
Q  243 gaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaa 342  Q
    ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||     
T  7520631 gaaggtctcaaccaccatgggcttggtgggaaccatcttaatgataccagcatcaccgttcttcaagaacttgggctccttctcaatctccttaccagat 7520532  T
Q  343 cgcctgtcaatcttagtaacaagt 366  Q
    |||||||||||||| |||||||||    
T  7520531 cgcctgtcaatcttggtaacaagt 7520508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 151 - 366
Target Start/End: Complemental strand, 7530260 - 7530045
Alignment:
Q  151 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 250  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||  || ||||    
T  7530260 ggatccttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacagcaaaacgtccaagaggaggatattcagcaaaggtct 7530161  T
Q  251 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtc 350  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  7530160 caaccaccatgggcttggtgggaaccatcttaatgataccagcatcaccattcttcaagaacttgggctccttctcaatctccttaccagatcgcctgtc 7530061  T
Q  351 aatcttagtaacaagt 366  Q
    |||||| |||||||||    
T  7530060 aatcttggtaacaagt 7530045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 154 - 365
Target Start/End: Original strand, 4230747 - 4230958
Alignment:
Q  154 tccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaa 253  Q
    ||||||||||||||| ||||||| || ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||    
T  4230747 tccttcttctccacacccttgataaccccaacagccacagtttgccgcatatctctgacagcaaaacggccaagtggaggatattcagagaaagtctcaa 4230846  T
Q  254 ccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaat 353  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||||||| |||||||| |||||||||||||||||    
T  4230847 ccaccatgggcttggtgggaatcatcttaataataccagcatctccattcttcaggaatttaggctccttctcgatctccttaccagaacgcctgtcaat 4230946  T
Q  354 cttagtaacaag 365  Q
    ||||||||||||    
T  4230947 cttagtaacaag 4230958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 298
Target Start/End: Complemental strand, 19965504 - 19965381
Alignment:
Q  175 atgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaa 274  Q
    ||||| |||| |||||||||||||||||| || ||  || | |||| ||| ||||||||||| | |||||||| ||| |||||||| ||||||| |||||    
T  19965504 atgactccaaaagccacagtttgacgcatgtctctagcaacaaaacagccgagtggaggatattgagagaaagcctctaccaccataggcttggcgggaa 19965405  T
Q  275 tcatcttaataataccagcatcac 298  Q
    ||||||||| || | |||||||||    
T  19965404 tcatcttaacaacagcagcatcac 19965381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 151 - 356
Target Start/End: Original strand, 4618968 - 4619173
Alignment:
Q  151 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 250  Q
    ||||||||||||| ||||||||| ||||| ||||||||||| ||| |||| || || |||||||| |||||||| |||| |||||| | ||| |||||||    
T  4618968 ggatccttcttcttcacagccttaatgactccaacagccactgttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 4619067  T
Q  251 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtc 350  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||||||  |||| ||||||| ||||||    
T  4619068 ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc 4619167  T
Q  351 aatctt 356  Q
    ||||||    
T  4619168 aatctt 4619173  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 4788434 - 4788300
Alignment:
Q  178 acaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatca 277  Q
    ||||||||||||||||||||| |||  |  | |||| | ||| ||||||||||||||||   | |||||| ||| |||||||| ||||||||||||| ||    
T  4788434 acaccaacagccacagtttgatgcaagtatcggacaacaaaatggccaagtggaggatatagatagaaaggctctaccaccataggcttggtgggaacca 4788335  T
Q  278 tcttaataataccagcatcaccgttcttcaagaat 312  Q
    ||| ||||| |||| ||||||| ||||||||||||    
T  4788334 tctcaataagaccatcatcaccattcttcaagaat 4788300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 312
Target Start/End: Original strand, 4296746 - 4296880
Alignment:
Q  178 acaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatca 277  Q
    ||||||||||||||| ||||| |||  ||   |||| | |||||||  ||||||||| |   |||||||| ||| |||||||| | || |||||||||||    
T  4296746 acaccaacagccacaatttgatgcaagtcttggacaacaaaacggctgagtggaggagatagagagaaaggctctaccaccatagactcggtgggaatca 4296845  T
Q  278 tcttaataataccagcatcaccgttcttcaagaat 312  Q
    ||||||||| || |   ||||| ||||||||||||    
T  4296846 tcttaataagacaattgtcaccattcttcaagaat 4296880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 151 - 329
Target Start/End: Original strand, 16348426 - 16348604
Alignment:
Q  151 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 250  Q
    ||||||||||| | |||| ||  |||||  |||| ||||||||||||| || |||| ||||||   |||||||| |||| |||||| ||||| |||||||    
T  16348426 ggatccttcttgttcacaaccaagatgattccaatagccacagtttgatgcgtatctctgacaataaaacggccgagtgaaggatattcagaaaaagtct 16348525  T
Q  251 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaat 329  Q
    | |||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||| ||||    
T  16348526 ctaccaccatgggcttggtgggaatcatctgaataatgccaccatcacctttcttcaagaatttgggctccttcacaat 16348604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 156 - 335
Target Start/End: Original strand, 33860118 - 33860297
Alignment:
Q  156 cttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaacc 255  Q
    |||| ||||||||| |  |||||| |||| |||||||||||||||| | || ||  || | |||||||| ||||||||||| | || ||||  ||| |||    
T  33860118 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcctgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 33860217  T
Q  256 accatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctt 335  Q
    ||||| ||||||||||||||||||||||||  | ||||||||||  ||||||||||||  |||||||||||||| |||||    
T  33860218 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttcctt 33860297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 16231484 - 16231618
Alignment:
Q  175 atgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaa 274  Q
    ||||| ||||||||||||||||||||||| || |||||||| ||||| ||||| | |||||| |||  || |  ||| |||||||| |||||  | ||||    
T  16231484 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 16231583  T
Q  275 tcatcttaataataccagcatcaccgttcttcaag 309  Q
    ||||||||| ||| || |||||||| |||||||||    
T  16231584 tcatcttaacaattcctgcatcaccattcttcaag 16231618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 34690149 - 34690276
Alignment:
Q  181 ccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatct 280  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||| |  ||||| |||  || |  ||| || |||||||| ||  | ||||||||||    
T  34690149 ccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagggatggatattcattgataccctccacgaccatgggtttcataggaatcatct 34690248  T
Q  281 taataataccagcatcaccgttcttcaa 308  Q
    ||| || | | |||||||| ||||||||    
T  34690249 taacaacagcggcatcaccattcttcaa 34690276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 34712561 - 34712688
Alignment:
Q  181 ccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatct 280  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||| |  ||||| |||  || |  ||| || |||||||| ||  | ||||||||||    
T  34712561 ccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagggatggatattcattgataccctccacgaccatgggtttcataggaatcatct 34712660  T
Q  281 taataataccagcatcaccgttcttcaa 308  Q
    ||| || | | |||||||| ||||||||    
T  34712661 taacaacagcggcatcaccattcttcaa 34712688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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