View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_13 (Length: 376)
Name: NF21435_low_13
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_13 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 28 - 376
Target Start/End: Original strand, 39117181 - 39117528
Alignment:
| Q |
28 |
gaggtagtattaggtgtagggtgtagtaagttatttgagaagagctagaagatttgtggtcgagaggtaggtgcggttggcggaagggaggtaacgagag |
127 |
Q |
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| T |
39117181 |
gaggtagtattaggtgtagggtgtagtaagttatttgagaagagctagaagatttgtggtcgagaggtaggtgcggttggcggaagggaggtaacgagag |
39117280 |
T |
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| Q |
128 |
tagtggtgagatggaggttagggtgcaagatgttcaagtgtcaagttctgttagagttaaaaggtttaaattttttaagtttctgatggataataactgt |
227 |
Q |
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| T |
39117281 |
tagtggtgagatggaggttagggtgcaagatgttcaagtgtcaagttctgttagagttaaaagatttaaattttttaagtttctgatggataataactgt |
39117380 |
T |
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| Q |
228 |
tatgttggannnnnnnnnaattgaattttctttcttgtagaacaagaaacaatatttgaccaaacaatgatagtaaaaagaaaagtaattaagaatgtga |
327 |
Q |
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| T |
39117381 |
tatgttgga-ttttttttaattgaattttctttcttgtagaacaagaaacaatatttgaccaaacaatgatagtaaaaagaaaagtaattaagaatgtga |
39117479 |
T |
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| Q |
328 |
caattgagtctttattaaagaaagactttgaagctgagatgaaatgacc |
376 |
Q |
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| T |
39117480 |
caattgagtctttattaaagaaagactttgaagctgagatgaaatgacc |
39117528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 52 - 374
Target Start/End: Complemental strand, 38613127 - 38612790
Alignment:
| Q |
52 |
agtaagttatttgagaagagctagaagatttgtggtcgagaggtaggtgcggttgg-cggaagggaggtaacgagagtagtggtgagatggaggttag-- |
148 |
Q |
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| T |
38613127 |
agtatgttctttgagaagagcaagaagatttgtactggagagctaggatcggttggtcggaagggaggtaacgagagtagtggcgagatggaggttagtt |
38613028 |
T |
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| Q |
149 |
-----------------ggtgcaagatgttcaagtgtcaagttctgttagagttaaaa-ggtttaaattttttaagtttctgatggataataactgttat |
230 |
Q |
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| T |
38613027 |
aggcctgtggtggataggatgcaagatgttgaagtgtcaagttctgttagagttaaaaaggtttaaattttttaagtttttgatggataataacggtttt |
38612928 |
T |
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| Q |
231 |
gttggannnnnnnnnaattgaattttctttcttgtagaacaagaaacaatatttgaccaaacaatgatagtaaaaagaaaagtaattaagaatgtgacaa |
330 |
Q |
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| T |
38612927 |
gttggattttt----aattgaattgtctttcttgtcgaacaagaaacattatttgaccaaacgatgatagtaaaaa--aaagtaattaagaatgtgacaa |
38612834 |
T |
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| Q |
331 |
ttgagtctttattaaagaaagactttgaagctgagatgaaatga |
374 |
Q |
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| T |
38612833 |
ttgagtcttcattacataaagactttgaagctgagatgaaatga |
38612790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 148 - 374
Target Start/End: Original strand, 39119557 - 39119781
Alignment:
| Q |
148 |
gggtgcaagatgttcaagtgtcaagttctgttagagttaaaaggtttaaattttttaagtttctgatggataataactgttatgttggannnnnnnnn-a |
246 |
Q |
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| T |
39119557 |
gggtgcaagatgttgaggagtcaagttctgttagagtttaaaggtttaaaaaatttacgtttctggtggttaa---ctgttatgttggatttttaattga |
39119653 |
T |
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| Q |
247 |
attgaattt--tctttcttgtagaacaagaaacaatatttgaccaaacaatgatagtaaaaagaaaagtaattaagaatgtgacaattgagtctttatta |
344 |
Q |
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| T |
39119654 |
attgtctttcctctttcttgaataataagaaacattatt-gaccaaacgatgatagtaaaaa-aaaagtaattaagaatgtgaccattgagccttcttta |
39119751 |
T |
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| Q |
345 |
aagaaagactttgaagctgagatgaaatga |
374 |
Q |
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| T |
39119752 |
cagaaagaccttgaagctgagatgaaatga |
39119781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 48237480 - 48237435
Alignment:
| Q |
246 |
aattgaattttctttcttgtagaacaagaaacaatatttgaccaaa |
291 |
Q |
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| T |
48237480 |
aattgaactgtctttcttgtagaacaagaaacattctttgaccaaa |
48237435 |
T |
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