View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_18 (Length: 281)
Name: NF21435_low_18
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_18 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 6732160 - 6731896
Alignment:
| Q |
17 |
caagaaaagcttcagaagaaacttgatgctcttcactggcattcgtctgttgttgttccatttgagaataaaagggatttgatgaagctgttggttcttg |
116 |
Q |
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| T |
6732160 |
caagaaaagcttcagaagaaacttgatgctcttgactggcattcgtctgttgttgttccatttgagaataaaagggatttgatgaagctgttggttcttg |
6732061 |
T |
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| Q |
117 |
cggaaaagattcatgggaatcaaataaggttttggtgtggtgctcctcaagttcctgaatttaccggaaggcttgaccttttcactgagttgaagattga |
216 |
Q |
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| T |
6732060 |
cggaaaagattcatgggaatcaaataaggttttggtgtggtgctcctcaagttcctgaatttactggaaggcttgaccttttcactgagttgaagattga |
6731961 |
T |
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| Q |
217 |
gttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtgcttctgttaaacccactc |
281 |
Q |
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| T |
6731960 |
gttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtgcttctgttaaacccactc |
6731896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 281
Target Start/End: Complemental strand, 6740716 - 6740513
Alignment:
| Q |
78 |
ttgagaataaaagggatttgatgaagctgttggttcttgcggaaaagattcatgggaatcaaataaggttttggtgtggtgctcctcaagttcctgaatt |
177 |
Q |
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| T |
6740716 |
ttgagaataaaagggatttgatggaggtgttgactcatgtgaaagataatcatgtgaatcaaattaggggtctgtgtggtgctcctcaggagcctgaatt |
6740617 |
T |
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| Q |
178 |
taccggaaggcttgaccttttcactgagttgaagattgagttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtgcttctgttaaaccc |
277 |
Q |
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| T |
6740616 |
tattggaatggttaagcaatttaatgagttgaaggttgaattgatgaaggatggtgcttctgtgcttgttttgactggtttgggtggatctggtaaaacc |
6740517 |
T |
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| Q |
278 |
actc |
281 |
Q |
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| T |
6740516 |
actc |
6740513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 6749652 - 6749593
Alignment:
| Q |
204 |
agttgaagattgagttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtg |
263 |
Q |
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| T |
6749652 |
agttgaagattgagttgatgaaggatggtgtttctgtactttttttgactggtttgggtg |
6749593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 7095671 - 7095748
Alignment:
| Q |
204 |
agttgaagattgagttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtgcttctgttaaacccactc |
281 |
Q |
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| T |
7095671 |
agttgaagattgaattgatgaaagatggtgtttctgtgcttgttttgactggtttgggtggatctggtaaaaccactc |
7095748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 6725491 - 6725412
Alignment:
| Q |
202 |
tgagttgaagattgagttgctcaagtatggtgtttctgtgtttcttttgactggtttgggtgcttctgttaaacccactc |
281 |
Q |
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|||||||||| |||| ||| | ||| |||||| ||||||| || |||||||||||||||||| |||| |||| |||||| |
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| T |
6725491 |
tgagttgaaggttgaattgatgaaggatggtgcttctgtgcttgttttgactggtttgggtggatctggtaaaaccactc |
6725412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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