View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_19 (Length: 280)
Name: NF21435_low_19
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 13348210 - 13348351
Alignment:
| Q |
7 |
tccaagaatatctccatttaagatcagcaccaacaggaacatgaggtcgatgttcttcaggcatttctttcactttctcttgcatttcttcatccaccaa |
106 |
Q |
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| T |
13348210 |
tccaaaaatatctccatttaagatcagcaccaacaggaacatgaggtcgatgttcttcaggcatttctttcactttctcttgcatttcttcatccaccaa |
13348309 |
T |
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| Q |
107 |
acttctcggcacttccactctctccggcgtaaccccaaccta |
148 |
Q |
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| T |
13348310 |
acttctcggtacttccactctctccggcgtaaccccaaccta |
13348351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 13348534 - 13348649
Alignment:
| Q |
147 |
tatacattatacagtaattaaactctaatttcaatttaaactagtaaataagtgaaacgattaatgaacctggtaatgcaaatgaggtctctcttggcga |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13348534 |
tatacattatacagtaattaaactctaatttcaatttaaactagtaaataagtgaaacgattaatgaacctggtaatgcaaatgaggtctctcttgacga |
13348633 |
T |
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| Q |
247 |
atcttgaagtcatgag |
262 |
Q |
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| T |
13348634 |
atcttgaactcatgag |
13348649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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