View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_20 (Length: 266)
Name: NF21435_low_20
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_20 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 3034312 - 3034564
Alignment:
| Q |
14 |
tactccaatataaaggtttgcattgtaaagaaatcacaaccgaaatttaataccacggctgagattattaaaatattaaccaattcctcacgcccttacc |
113 |
Q |
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| T |
3034312 |
tactccaatataaaggtttgcattgtaaagaaatcacaaccgcaatttaataccacggctgagattattaaaatattaaccaattcctcatgcccttacc |
3034411 |
T |
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| Q |
114 |
taataagaatgtttgtcgatgccgttccctctttgcggtcggtcgcaatatgttcattccttttctatgattcccatttgcaaagtgcttaatgaaggca |
213 |
Q |
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| T |
3034412 |
taataagaatgtttgtcgatgccgttccctctttgcggtcggtcgcaatatgttcattccttttctatgattcccatttgcaaagtgcttaatgaaggca |
3034511 |
T |
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| Q |
214 |
tgttccaccctttccaagagcctattaaccttttacaatacatgatggagtat |
266 |
Q |
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| T |
3034512 |
tgttccaccctttccaagagcctattaaccttttacaatacatgatggagtat |
3034564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 72 - 266
Target Start/End: Original strand, 3019292 - 3019485
Alignment:
| Q |
72 |
ctgagattattaaaatattaaccaattcctcacgcccttacctaataagaatgtttgtcgatgccgttccctctttgcggtcggtcgcaatatgttcatt |
171 |
Q |
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||||||||||||||| ||||||||||| | | | ||||||||||||||||||||| |||||||||||||||||| || |||||||||||| |||||||| |
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| T |
3019292 |
ctgagattattaaaaaattaaccaattgtttatgaccttacctaataagaatgtttttcgatgccgttccctcttcgcagtcggtcgcaatgtgttcatt |
3019391 |
T |
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| Q |
172 |
ccttttctatgattcccatttgcaaagtgcttaatgaaggcatgttccaccctttccaagagcctattaaccttttacaatacatgatggagtat |
266 |
Q |
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| T |
3019392 |
ccttttctatgattcccatttgcaaagtgcttaatgaaggcatgttccaccctttccatgagcctattaacc-tttacaatacatgatggagtat |
3019485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 58 - 266
Target Start/End: Original strand, 3009317 - 3009525
Alignment:
| Q |
58 |
atttaataccacggctgagattattaaaatattaaccaattcctcacgcccttacctaataagaatgtttgtcgatgccgttccctctttgcggtcggtc |
157 |
Q |
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|||||| ||||| | |||||||||| ||| ||||||||||| ||| ||||||||||||||||||||||| ||||||| | |||||||| | ||| |||| |
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| T |
3009317 |
atttaaaaccacagatgagattattcaaaaattaaccaatttttcatgcccttacctaataagaatgtttttcgatgcagctccctcttcgtggttggtc |
3009416 |
T |
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| Q |
158 |
gcaatatgttcattccttttctatgattcccatttgcaaagtgcttaatgaaggcatgttccaccctttccaagagcctattaaccttttacaatacatg |
257 |
Q |
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| T |
3009417 |
gcaatattctcattccttttctatgattcccatttgcaaagtgcttaatgaaggcatgttccaccctttccatgagcctattaaccttttacagtacatg |
3009516 |
T |
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| Q |
258 |
atggagtat |
266 |
Q |
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|| |||||| |
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| T |
3009517 |
atagagtat |
3009525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 20059949 - 20059702
Alignment:
| Q |
14 |
tactccaatataaaggtttgcattgtaaagaaatcacaaccgaaatttaataccacggctgagattatt-aaaatattaaccaattcctcacgcccttac |
112 |
Q |
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|||||||||||||| ||||||| ||||| ||||| ||||||| || | || |||| ||| |||||||| |||| |||||| ||||| ||| |||||||| |
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| T |
20059949 |
tactccaatataaacgtttgcagtgtaatgaaattacaaccgcaaataaaaaccatggc--agattattgaaaaaattaacaaattcttcatgcccttac |
20059852 |
T |
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| Q |
113 |
ctaataagaatgtttgtcgatgccgttccctctttgcggtcggtcgcaatatgttcattccttttctatgattcccatttgcaaagtgcttaatgaaggc |
212 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20059851 |
ctaataagaatgttttccgatggcgttccctctttgcggtcggtcgcaaaatattcattccttttctatgattcccatttgcaaagtgcttaatgaaggc |
20059752 |
T |
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| Q |
213 |
atgttccaccctttccaagagcctattaaccttttacaatacatgatgga |
262 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20059751 |
atgttcgaccctttccaagagcctattaaccttttaaaatacatgatgga |
20059702 |
T |
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