View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_32 (Length: 243)
Name: NF21435_low_32
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38486686 - 38486907
Alignment:
| Q |
1 |
tagagtgatcaacataagcgaggacatttttgccggttttaactgtactattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaagga |
100 |
Q |
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| T |
38486686 |
tagagtgatcaacataagcgaggacatttttgccggttttaactgtactattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaagga |
38486785 |
T |
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| Q |
101 |
agggatgttgggttgaatcaaatatcaatgtttgaagccaaggttgccagtggaaatggggagcaagtattgagccgagatgtatatagattgggtcata |
200 |
Q |
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| T |
38486786 |
agggatgttgggttgaatcaaatatcaatgtttgaagccaaggttgccagtggaaatggggagcaagtattgagccgagatgtatatagattgggtcata |
38486885 |
T |
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| Q |
201 |
gactggatttcttcaggatgct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38486886 |
gactggatttcttcaggatgct |
38486907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 3685917 - 3686099
Alignment:
| Q |
1 |
tagagtgatcaacataagcgaggacatttttgccggttttaactgtactattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaagga |
100 |
Q |
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| T |
3685917 |
tagagtgatcaatattagtgaagatatttttgctggtttcaattgtacattgcgaggtggcaatgtgacacatcatgaatatatacaggtaggtaaagga |
3686016 |
T |
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| Q |
101 |
agggatgttgggttgaatcaaatatcaatgtttgaagccaaggttgccagtggaaatggggagcaagtattgagccgagatgt |
183 |
Q |
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| T |
3686017 |
agagatgttggcttgaatcagatatccatgtttgaggccaaggtcgcaagtggcaatggcgagcaggtgttgagcagagatgt |
3686099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 26002355 - 26002243
Alignment:
| Q |
53 |
cgtggaggtaatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggttgaatcaaatatcaatgtttgaagccaaggttgccagtg |
152 |
Q |
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|||| ||| ||| |||| |||||||| ||||| |||||||| ||||||||||| || || | || || ||||||||||||||||| ||| |||| | || |
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| T |
26002355 |
cgtgaaggaaatgtcactcatcatgagtacatacaagttggtaaaggaagggacgtcggtcttaaccagatatcaatgtttgaagcaaagattgctaatg |
26002256 |
T |
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| Q |
153 |
gaaatggggagca |
165 |
Q |
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| T |
26002255 |
ggaatggtgagca |
26002243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 30121086 - 30121307
Alignment:
| Q |
2 |
agagtgatcaacataagcgaggacatttttgccggttttaactgtactattcgtggaggtaatatcacacatcatgaatacattcaagttggaaaaggaa |
101 |
Q |
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|||||||||||||||||||||||||| ||||| || || || |||||| |||||||||||||| |||| || |||||||||||||| |||||||| |||| |
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| T |
30121086 |
agagtgatcaacataagcgaggacatatttgctgggttcaattgtactcttcgtggaggtaatgtcactcaccatgaatacattcaggttggaaagggaa |
30121185 |
T |
|
| Q |
102 |
gggatgttgggttgaatcaaatatcaatgtttgaagccaaggttgccagtggaaatggggagcaagtattgagccgagatgtatatagattgggtcatag |
201 |
Q |
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| T |
30121186 |
gggatgttggtctgaatcaagtatcaatgtttgaagccaaggttgctagtggcaacggggaacaaatcctgagcagagatgtgtacaggttgggtcatag |
30121285 |
T |
|
| Q |
202 |
actggatttcttcaggatgctt |
223 |
Q |
| |
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|| ||||| ||| | |||||| |
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| T |
30121286 |
gcttgattttttccgaatgctt |
30121307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 43955900 - 43955842
Alignment:
| Q |
62 |
aatatcacacatcatgaatacattcaagttggaaaaggaagggatgttgggttgaatca |
120 |
Q |
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| T |
43955900 |
aatattactcatcatgaatacatccaagttggaaagggtagagatgttgggatgaatca |
43955842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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