View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_33 (Length: 238)
Name: NF21435_low_33
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 35527800 - 35528012
Alignment:
| Q |
11 |
cagagagattcccattggatttcgatatatttaaaactccggttaatccaagtacaataactggtaacggtgtttacaagtttcagttgaatgagattgt |
110 |
Q |
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| T |
35527800 |
cagagagattcccattggatttcgatatatttaaaactccggttaatccaagtacaataaccggtaacggtgtttacacgtttcagttgaatgaggttgt |
35527899 |
T |
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| Q |
111 |
tgatgtgatactacaaaatgcaaacatgttgaaagagaatactagtgaagttcatccatggcatttacatggacatgatttttgggttttgggatatggt |
210 |
Q |
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| T |
35527900 |
tgatgtgatactacaaaatgcaaacatgttgaaagagaatactagtgaagttcatccatggcatttacatggacatgatttttgggttttgggatatggt |
35527999 |
T |
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| Q |
211 |
gaagggaaatttg |
223 |
Q |
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| T |
35528000 |
gaagggaaatttg |
35528012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 35509603 - 35509814
Alignment:
| Q |
11 |
cagagagattcccattggatttcgatatatttaaaactccggttaatccaagtacaataactggtaacggtgtttacaagtttcagttgaatgagattgt |
110 |
Q |
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| T |
35509603 |
cagagagatttccaatggattatgacatatttaaaaatccagtgaatccaaacacaactaccggcaatggtgtttacacgttccagttgaatgaggttgt |
35509702 |
T |
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| Q |
111 |
tgatgtgatactacaaaatgcaaacatgttgaaagagaatactagtgaagttcatccatggcatttacatggacatgatttttgggttttgggatatggt |
210 |
Q |
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| T |
35509703 |
tgatgtgatactacaaaatgcaaaccagttaaatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatggt |
35509802 |
T |
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| Q |
211 |
gaagggaaattt |
222 |
Q |
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| T |
35509803 |
gaagggagattt |
35509814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 35542314 - 35542508
Alignment:
| Q |
27 |
ggatttcgatatatttaaaactccggttaatccaagtacaataactggtaacggtgtttacaagtttcagttgaatgagattgttgatgtgatactacaa |
126 |
Q |
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||||| ||| |||||||||| ||| |||||||||| ||||| || |||||||||||||||| |||| | ||||||||||||||||||||||||| |
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| T |
35542314 |
ggattacgacatatttaaaaatccagttaatccaaatacaactaccggtaacggtgtttacatgtttaataaagatgagattgttgatgtgatactacag |
35542413 |
T |
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| Q |
127 |
aatgcaaacatgttgaaagagaatactagtgaagttcatccatggcatttacatggacatgatttttgggttttgggatatggtgaagggaaatt |
221 |
Q |
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| T |
35542414 |
aatgcaaaccagttacatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatggagaagggaaatt |
35542508 |
T |
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