View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_37 (Length: 234)
Name: NF21435_low_37
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 3332177 - 3332399
Alignment:
| Q |
1 |
agttaatgaaaccaatggaagagcattgttttactggttttttgaggccatgaccaagcctgaagacaaaccattggttttatggcttaatggaggtaag |
100 |
Q |
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| T |
3332177 |
agttaatgaaaccaatggaagagcattgttttactggttttttgaggccattactaagcctgaagacaaaccattggttttatggcttaatggaggtaag |
3332276 |
T |
|
| Q |
101 |
gtcatgctttggtatgaatgtaaataacaaatttgtgaacaaaaagtttattgaactcattttactttaa---nnnnnnnnaattggtggggaagagtgt |
197 |
Q |
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| T |
3332277 |
gtcatgctttggtatgaatgtaaataacaaatttgtgaacaaaaagtttattgaactcattttactttaattttttttcttaattggtggggaagagtgt |
3332376 |
T |
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| Q |
198 |
gatgttattttgtatgtttacaa |
220 |
Q |
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| T |
3332377 |
gatgttattttgtatgtttacaa |
3332399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 3338528 - 3338622
Alignment:
| Q |
5 |
aatgaaaccaatggaagagcattgttttactggttttttgaggccatgaccaagcctgaagacaaaccattggttttatggcttaatggaggtaa |
99 |
Q |
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| T |
3338528 |
aatgaaaccaatggaagatcactcttttattggttttttgaggccgtgacaaaacctgaggagaaaccattgcttttatggcttaatggaggtaa |
3338622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 3228152 - 3228236
Alignment:
| Q |
9 |
aaaccaatggaagagcattgttttactggttttttgaggccatgaccaagcctgaagacaaaccattggttttatggcttaatgg |
93 |
Q |
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| T |
3228152 |
aaaccaatggaagatctctcttttattggttttttgaggtcgtgaccaaacctaaggagaaaccattacttttgtggcttaatgg |
3228236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 35795734 - 35795644
Alignment:
| Q |
9 |
aaaccaatggaagagcattgttttactggttttttgaggccatgaccaagcctgaagacaaaccattggttttatggcttaatggaggtaa |
99 |
Q |
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| T |
35795734 |
aaaccaatggaagagcactcttttattggttctatgaggctatggctaagccagaagagaaaccattggtgttgtggcttaatggaggtaa |
35795644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 28686676 - 28686720
Alignment:
| Q |
2 |
gttaatgaaaccaatggaagagcattgttttactggttttttgag |
46 |
Q |
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| T |
28686676 |
gttaatgaaactcatggaagagcactgttttattggttttttgag |
28686720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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