View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_4 (Length: 588)
Name: NF21435_low_4
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 302 - 572
Target Start/End: Complemental strand, 19065570 - 19065300
Alignment:
| Q |
302 |
atctactcttagttgatcaaggatgaaaacaaagtattttgtctttgtattttcgtgtgcactgannnnnnnctcagttgtggcaattgcgccatccaaa |
401 |
Q |
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| T |
19065570 |
atctactcttaattgatcaaggatgaaaacaaagtattttgtctttgtattttcgtgtgcactgatttttttctccgttgtggcaattgcgccatccaaa |
19065471 |
T |
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| Q |
402 |
catggtaattggtaaatagtgtgtgtgtaaatatatattacactgtataaacaatttctttcttcttttactatatttaataaaaagtgttcgttaaatt |
501 |
Q |
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| T |
19065470 |
catggtaattggtaaatagtgtgtgtgtaaatatatattacactgcataaacaatttctttcttcttttactatatttaataaaaagtgttcgttaaatt |
19065371 |
T |
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| Q |
502 |
tcagttggcgcaacagaaaaattcaaaataagtgttgaatggaaaccgagacccggcccgagtgctgaaag |
572 |
Q |
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| T |
19065370 |
tcagttggcgcaacagaaaaattcaaaataagtgttgaatggaaaccgagacccgggccgagtgctgaaag |
19065300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 19065815 - 19065661
Alignment:
| Q |
13 |
aatatttaggtgtaaaagaaattattaaacattataatcactttttagtaatcattgtgtaaaaaaccttcttaccgctttttgtaaacatgtcccaatt |
112 |
Q |
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| T |
19065815 |
aatatttaagtgtaaa-gaaattattaaacattataagcaccttttagtaatcattgtgtaaaaaaccttcttacctctttatgtaaacatgtcccaatt |
19065717 |
T |
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| Q |
113 |
gaaccctaaatgtctcaatatatgttgatgacctattatcctcacaataagccaaa |
168 |
Q |
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| T |
19065716 |
gaaccctaaatgtctcaatatatgttgatggcctattatcctcacaataagccaaa |
19065661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 19065607 - 19065560
Alignment:
| Q |
235 |
tataaatagctattgattgtatttatagttagttacaatctactctta |
282 |
Q |
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| T |
19065607 |
tatatatagctattgattgtgtttatagttagttacaatctactctta |
19065560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 532
Target Start/End: Original strand, 17179399 - 17179470
Alignment:
| Q |
461 |
ttcttcttttactatatttaataaaaagtgttcgttaaatttcagttggcgcaacagaaaaattcaaaataa |
532 |
Q |
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| T |
17179399 |
ttcttcttttactatatttgataaaaattgtttgttgacttgcagttggtgcaacaaaagaatccaaaataa |
17179470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 340
Target Start/End: Original strand, 36253202 - 36253232
Alignment:
| Q |
310 |
ttagttgatcaaggatgaaaacaaagtattt |
340 |
Q |
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| T |
36253202 |
ttagttgatcaaggatgaaaacaaagtattt |
36253232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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