View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_41 (Length: 226)
Name: NF21435_low_41
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 39117525 - 39117734
Alignment:
| Q |
1 |
gaccgagggggtgggctcccttcttttcaaaataacacagtgatattagtggtggtcagtcgactctcaaaggcttcacactttggtatgctgccgacca |
100 |
Q |
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| T |
39117525 |
gaccgagggggtgggctcccttcttttcaaaataaca--gtgatattagtggtggtcggtcgactctcaaaggcttcacactttggtatgctgccgacca |
39117622 |
T |
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| Q |
101 |
atttcactgctgtcaaagtggcaaagttgtttgctcaaatatatgcaagctacatagaatggcgaagactcttgtacatctggccgtgacccgattttct |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39117623 |
atttcactgctgtcaaagttgcaaagttgtttgctcaaatatatgcaagctacatagaatggcgaagactcttgtacatctggccgtgacccgattttct |
39117722 |
T |
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| Q |
201 |
cagttgtttttg |
212 |
Q |
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|||||||||||| |
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| T |
39117723 |
cagttgtttttg |
39117734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 38612788 - 38612582
Alignment:
| Q |
4 |
cgagggggtgggctcccttcttttcaaaataacacagtgatattagtggtggtcagtcgactctcaaaggcttcacactttggtatgctgccgaccaatt |
103 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
38612788 |
cgagggggtgggctcccttcttttcaaaatcacactgtgatattagtggtggtcggtcgactctcaaaggcttcacactttggtatactgccgatcaatt |
38612689 |
T |
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| Q |
104 |
tcactgctgtcaaagtggcaaagttgtttgctcaaat-atatgcaagctacatagaatggcgaagactcttgtacatctggccgtgacccgattttctca |
202 |
Q |
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||| || ||||||||| ||| ||||||| | |||||| ||||||||||| |||| |||||| ||||||| ||| |||| ||||||||||||||||||| |
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| T |
38612688 |
tcaatgttgtcaaagttgcagagttgttcgttcaaatgatatgcaagctgcataaaatggc-aagactcatgt--atcttaccgtgacccgattttctca |
38612592 |
T |
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| Q |
203 |
gttgtttttg |
212 |
Q |
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|| ||||||| |
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| T |
38612591 |
gtcgtttttg |
38612582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 39119789 - 39119898
Alignment:
| Q |
10 |
ggtgggctcccttcttttcaaaataacacagtgatattagtggtggtcagtcgactctcaaaggcttcacactttggtatgctgccgaccaatttcactg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39119789 |
ggtgggctcccttcttttcaaaataacacagtgatattagtggtggtcggtcgactctcaaaggcttcacaatttggtatgctgccgaccaatttcactg |
39119888 |
T |
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| Q |
110 |
ctgtcaaagt |
119 |
Q |
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|||||||||| |
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| T |
39119889 |
ctgtcaaagt |
39119898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 38611694 - 38611624
Alignment:
| Q |
141 |
atatgcaagctacatagaatggcgaagactcttgtacatctggccgtgacccga-ttttctcagttgtttttg |
212 |
Q |
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||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||| |||||||||| ||||||| |
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| T |
38611694 |
atatgcaagctacatggaacggcgaagactcttgt--atctgaccgtgacccgatttttctcagtcgtttttg |
38611624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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