View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_5 (Length: 545)
Name: NF21435_low_5
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 87 - 529
Target Start/End: Original strand, 8340681 - 8341123
Alignment:
| Q |
87 |
ctagtacatttgatttgtttggtttctgaattgtgatatataacattttcttgtttgttcgtcagtctctctggtgcagttcatgtaagcatccaacact |
186 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8340681 |
ctagtatatttgatttgtttggtttctgaattgtgatatataacattttcttgtttgttcgtcagtctctctggtgcagttcatgtaagcatccaacact |
8340780 |
T |
|
| Q |
187 |
ccacggctgttagtttgccatcactaaagatgttgatgatcgacattggttatgctgaagtatcttctttgaatgcacttcttgatggctgctcaagtat |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8340781 |
ccacggctgttagtttgccatcactaaagatgttgatgatcgacattggttatgttgaagtatcttctgtgaatgcacttcttgatggctgctcaagtat |
8340880 |
T |
|
| Q |
287 |
agaaattctggatctttgcttttcagcccaaagcttggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatgttgga |
386 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8340881 |
agaaattctggatcttggcttttcagcccaaagcttggataaagtttgtgtcccgccttccttgaaaaggttgaaaatcaccattgagaatgatgttgga |
8340980 |
T |
|
| Q |
387 |
gcttacttggaagtaaatgcgccggatcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtgg |
486 |
Q |
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| T |
8340981 |
gcttacttggaagtaaatgcgccggatcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtgg |
8341080 |
T |
|
| Q |
487 |
aagcgtatcttgatgtctttcccacgtcgcttggttccatcgt |
529 |
Q |
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| T |
8341081 |
aagcgtatcttgatgtctttcccacgtcgcttggttccatcgt |
8341123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 8340612 - 8340649
Alignment:
| Q |
18 |
tatagaccgttttaaacatgaacaaattttaggagact |
55 |
Q |
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| T |
8340612 |
tatagaccgttttaaacatgaacaaattttaggagact |
8340649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 94 - 530
Target Start/End: Original strand, 17477635 - 17478069
Alignment:
| Q |
94 |
atttgatttgtttggtttctgaattgtgatatataacattttcttgtttgttcgtcagtctctctggtgcagttcatgtaagcatccaacactccacggc |
193 |
Q |
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||||||||| ||||||||||||||||||||||| ||| || | | ||||||| ||||||||| ||||| | || ||| | |||||||||||| |||| |
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| T |
17477635 |
atttgatttttttggtttctgaattgtgatata--acacttacatatttgttcctcagtctctgtggtgaaatttgtgttaacatccaacactctacggt |
17477732 |
T |
|
| Q |
194 |
tgttagtttgccatcactaaagatgttgatgatcgacattggttatgctgaagtatcttctttgaatgcacttcttgatggctgctcaagtatagaaatt |
293 |
Q |
| |
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| T |
17477733 |
gattagtttaccgtcactaaagatgctgctaatcaatattggtcatatggaagtaccttccattaatgcactcctctgtggctgcccaaatatagaatct |
17477832 |
T |
|
| Q |
294 |
ctggatctttgcttttcagcccaaagcttggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatgttggagcttact |
393 |
Q |
| |
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||| ||||| ||||||| | |||||||| || |||||||| || | ||| ||||||||||| | ||||||||| | | |||| |||||| |||||| |
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| T |
17477833 |
ctgaatcttggcttttctccgcaaagcttagacaaagtttgcatcccacctcccttgaaaaggcttaaaatcaccgtagcaaatgttgttggggcttacc |
17477932 |
T |
|
| Q |
394 |
tggaagtaaatgcgccggatcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgta |
493 |
Q |
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| ||| ||||||| ||| ||||| | ||||||||||||||| ||||||||||||| ||| ||||| | |||| | ||||| ||| |||||||||||||| |
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| T |
17477933 |
ttgaaataaatgcaccgaatcttgagtaccttaacattaccggaatcacattcggccaagttttcaccatgtataacttgcacaatgtggtggaagcgta |
17478032 |
T |
|
| Q |
494 |
tcttgatgtctttcccacgtcgcttggttccatcgtc |
530 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||| |
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| T |
17478033 |
tcttgatgtctttccccaatcgcttggttccgtcgtc |
17478069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 315 - 509
Target Start/End: Complemental strand, 29585551 - 29585354
Alignment:
| Q |
315 |
caaagcttggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatg---ttggagcttacttggaagtaaatgcgccgg |
411 |
Q |
| |
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||||||||||| |||||||||||| | |||||||| | |||||| |||| ||| |||| |||||| |||| | |||| | ||| |||||||||| | |
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| T |
29585551 |
caaagcttggacaaagtttgtgtcccaccttccttaagaaggttggaaattgccaatgaggatgatgaagttggggtttaccttgaaataaatgcgcctg |
29585452 |
T |
|
| Q |
412 |
atcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttccc |
509 |
Q |
| |
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||||| | |||||||||||||||| ||||||||| ||| | | ||||||| |||||| ||| | ||| || ||||||||||||||||||||||||||| |
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| T |
29585451 |
atcttgagtaccttaacattacccgaatcacatttggccaggatttcagcatgtacaacttacacaaagtcgtggaagcgtatcttgatgtctttccc |
29585354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 507
Target Start/End: Complemental strand, 4427826 - 4427641
Alignment:
| Q |
322 |
tggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatgttggagcttacttggaagtaaatgcgccggatcttcaata |
421 |
Q |
| |
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||||||||||||| ||| | ||||| ||||||||||| | ||||| |||||| ||||| ||||| |||||| | ||| | || || ||||||||| | || |
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| T |
4427826 |
tggataaagtttgcgtcccaccttctttgaaaaggttgacaatcatcattgataatgaagttggggcttaccttgaaatgaaagcaccggatcttgagta |
4427727 |
T |
|
| Q |
422 |
ccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttc |
507 |
Q |
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| T |
4427726 |
cctttacatcaacggaatcacatccggcgaagtttttagcatgtacaacttgcacaatgtggtggaagcacatcttaatgtttttc |
4427641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 24935062 - 24935109
Alignment:
| Q |
343 |
cttccttgaaaaggttaaaaatcaccattgagaatgatgttggagctt |
390 |
Q |
| |
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|||||||||| |||||||||||||| |||||||||||||||| |||| |
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| T |
24935062 |
cttccttgaagaggttaaaaatcactgttgagaatgatgttggggctt |
24935109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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