View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_7 (Length: 485)
Name: NF21435_low_7
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 18097438 - 18097214
Alignment:
| Q |
15 |
agcagagatcactaagaaacgaatatgatgaactgaagctacttctcacccatgaaactgccatggacgattagtagatgatgacattgacagaggagga |
114 |
Q |
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| T |
18097438 |
agcagagatcactaagaaacgaatatgatgaactgaagctacttctcacccatgaaactgccatggacgattagtagatgatgacattgacagaggagga |
18097339 |
T |
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| Q |
115 |
gtaaaagggtttcagtaaattgtgnnnnnnnnattgtagtgataatttaattaaa--annnnnnnnnnnggagagaaggtaatttaattaatattaatat |
212 |
Q |
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| T |
18097338 |
gtaaaagggtttcagtaaattgtgttttttttattgtagtgataatttaatttaatttaattttttttttgagagaaggtaatttaatcaatattaatat |
18097239 |
T |
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| Q |
213 |
aaaacaagtactttttattttccct |
237 |
Q |
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| T |
18097238 |
aaaacaactactttttattttccct |
18097214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 18097056 - 18097009
Alignment:
| Q |
246 |
tactatccatttataaaaataaatataacatggatctaccaaacccct |
293 |
Q |
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| T |
18097056 |
tactatccatttataaaaataaatataacatggatctaccaaacccct |
18097009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 18096973 - 18096939
Alignment:
| Q |
329 |
ctagcggtttattttgggaatgggaataaaattat |
363 |
Q |
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| T |
18096973 |
ctagcgatttattttgggaatgggaataaaattat |
18096939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 469
Target Start/End: Original strand, 25803 - 25844
Alignment:
| Q |
427 |
tcatatgcatgttaaaacgcaagtgttagacaccattatttat |
469 |
Q |
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| T |
25803 |
tcatatgcatgttaaaacgcaagtgct-gacaccattatttat |
25844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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