View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21435_low_9 (Length: 441)
Name: NF21435_low_9
Description: NF21435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21435_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 28693740 - 28693359
Alignment:
| Q |
18 |
cacagagcacatcatcagatacatcactataaatagagtgtctccttacatgtatgatcacacatatattactcatcccacttttacttgtattgatatc |
117 |
Q |
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| T |
28693740 |
cacagagcacatcatcagatacatcactataaataaagtgtctccttgcatgtatgatcacacatatattactcatcccacttttacttgtattgatatc |
28693641 |
T |
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| Q |
118 |
gatctaccagcaccttacttatttggacaagcataccctggttcccctgtttggagaaggagcatatgactagtcgaagtgaatctattcatcagtgtga |
217 |
Q |
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| T |
28693640 |
gatctaccagcaccttacttatttggacaagcataccct----cccctgtttggagaaggagcatatgactagtcgcagtgaatctgttcatcagtgtga |
28693545 |
T |
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| Q |
218 |
agaccacacctcctactcgattagaaggtacaccccacttgttaatacaagatcaagttagtttatgtgaaccgcatgaaccctctaatcattgaggcgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28693544 |
agaccacacctcctactcgattagaaggtacaccccacttgttaatacaagatcaagttagtttatgtgaaccgcatgaaccctctaatcattgaggcgt |
28693445 |
T |
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| Q |
318 |
tccaaagtgatcaacaaataggcatatgtcaaaataaaaatgttgtacatgtttggcatgaaagaaattaaagtagtctcatagta |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28693444 |
tccaaagtgatcaacaaataggcatatgtcaaaataaaaatgttgtacatgtttggcatgaaagaaattaaagtagtctcagagta |
28693359 |
T |
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